Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05965 ATGACCCCTCTTTTTATTTTCAAATCATTAATATTCTTCCAGTTCGTGCTTCATGTTTCAGGTCAAAATGATGGAAGATGTCCAACCTCTTTTAGTTGTGGATATATTGGCAATATTACCTTCCCTTTCACAGTCACAGAAAGCCCTCACTGTGGTATTTTGGCCATAAGTGGTTGTGATAAAAACGGTATAGTTTCTCCAAAAACCATCCAATTAGGCAAGCGACCATCCAATCAGTCTTTCATAGTTACATATGTGGATCATGATACCATCACAGTCCGAGATGATGCTCTACGGGATAAGTTGCCTTTAAAAGATTGCCAGGCCTTTAACAACTTTACTGTTCCTCCGACCTCTCCTTTAGCATCTTTCTATATCAAATATAATATAACTATGTTCAAGTGCTACCACTCCCTTAACATCACCCTTCGCGGACATTTTTCTTTTTATAAGTATACAAACTGTTCCGGTTATAATCTCTATTATGACCTACTAAATAGTGTGAGACCTCGCGGTTTTAAAGTGCCAAGTTCTTTGGCACAGTGTACACAGTGTCAGGTTGCAATAAGAGACTTCCCCACAGCTGACCCCTTTGAATTTGTATCTCCTGAAATCTCCATTGAAGTACAATTATCTGATGATTGTAACAAGTGTCTCCGTCACCAAGTGGGGCAATGTCAACTTGACAATCAAGGAAAATTCTTCTGTGCCCAAGTTGCAGAGGATAAAGGATTGGCTTGGAAGTTAGGGCTTGGCATTGGACTCCTTGTTGTCATTATTATAACTGGGTTGCTGATTATATGGCGCTGCAAGCGACGCGTTCCTGATTTCTACTCAAAGAAATACACAGAGAGTGACAGTGTCTACCATGGGGTACCAGTCTTTTCCTTTAAGGATCTTGAAGTAGCAACAAAAAAATTTGACAGTTCAAGAGAACTTGGAGAAGGAGGCTTTGGGACTGTTTATTATGGAAAACTTAAAGATGGACGTGAAGTTGCTGTGAAGCGCCTATATCAGCACAACTTTAAACGAGTTGAACAGTTCATGAATGAAATCAAGATCCTCACTCGCTTGCGTCACAGAAATCTAGTGTCACTCTATGGCTGCACTTCACATCAAAGTCATGAGCTATTGCTTGTTTATGAATACATTTCAAATGGAACTGTCGCCAGTCATCTGCGTCGTGAATCTGGCTTTTTGCCGTGGCATATCCGAATGAAAGTTGCTTTAGAGACCGCTACTGCTTTGGCTTATCTCCATGCTTCTGAAATCATTCACCGTGATGTGAAAACAAACAACATTCTCCTTGACAACACCTTTTGCATTAAAGTTGCAGATTTTGGACTTTCAAAACTGTTCCCAAATGATGTTACGCACGTCTCCACAGCTCCACAAGGAACCCCAGGCTATGTGGATCCGGAATATCATCAATGCTACAGGCTTACAAGTAAGAGTGACGTTTACAGCTTCGGGGTTGTCCTTGTTGAGCTGATATCATCTATGCCAGCAGTTGATATGAGCAGAGATAAGGATGAGATCAACTTGGCAAATCTAGCAGTAAGGAAAATTCAGAAAAGTGCAATCCATGAGCTGGTGGATCCTTCCCTTGGTTTTGAGTCAGATAATGATGTTAAAAGGAAAATAGTATCAATAGCAGAATTGGCTTTTCAGTGTCTGCAACGGGATAAGGAATTGAGGCCTTCAATGGATGAGGTTTTGGAGGTGCTAAGAAGAATTGATAGCGGAAGTGTGAGTGTGAGTGGTAGGGATGAGTTTGGACATGTAGAGGAAGTAATAGACCATGGAGCAAGGATATCATGTATCAATGTACATTCACCGTCCCCGTCTTCACCCGACCATGTTGAGGTGAAATTGTTGAAGAATAAGAAGTTAACACCAACTCCTAAGTCTGTGACAGATAAATGGGATAGTGAATCCACAACTTCTAATGTTAGTGGTCAATCGGCAAGCCGAATGTAA 1980 0.4106 MTPLFIFKSLIFFQFVLHVSGQNDGRCPTSFSCGYIGNITFPFTVTESPHCGILAISGCDKNGIVSPKTIQLGKRPSNQSFIVTYVDHDTITVRDDALRDKLPLKDCQAFNNFTVPPTSPLASFYIKYNITMFKCYHSLNITLRGHFSFYKYTNCSGYNLYYDLLNSVRPRGFKVPSSLAQCTQCQVAIRDFPTADPFEFVSPEISIEVQLSDDCNKCLRHQVGQCQLDNQGKFFCAQVAEDKGLAWKLGLGIGLLVVIIITGLLIIWRCKRRVPDFYSKKYTESDSVYHGVPVFSFKDLEVATKKFDSSRELGEGGFGTVYYGKLKDGREVAVKRLYQHNFKRVEQFMNEIKILTRLRHRNLVSLYGCTSHQSHELLLVYEYISNGTVASHLRRESGFLPWHIRMKVALETATALAYLHASEIIHRDVKTNNILLDNTFCIKVADFGLSKLFPNDVTHVSTAPQGTPGYVDPEYHQCYRLTSKSDVYSFGVVLVELISSMPAVDMSRDKDEINLANLAVRKIQKSAIHELVDPSLGFESDNDVKRKIVSIAELAFQCLQRDKELRPSMDEVLEVLRRIDSGSVSVSGRDEFGHVEEVIDHGARISCINVHSPSPSSPDHVEVKLLKNKKLTPTPKSVTDKWDSESTTSNVSGQSASRM 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05965 659 Gene3D Phosphorylase Kinase; domain 1 278 383 - -
Trre1g05965 659 SUPERFAMILY Protein kinase-like (PK-like) 288 580 IPR011009 -
Trre1g05965 659 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 647 IPR044652 GO:0004672
Trre1g05965 659 FunFam receptor-like protein kinase FERONIA 273 383 - -
Trre1g05965 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Trre1g05965 659 MobiDBLite consensus disorder prediction 632 659 - -
Trre1g05965 659 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Trre1g05965 659 ProSiteProfiles Protein kinase domain profile. 307 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05965 659 Pfam Protein kinase domain 308 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05965 659 FunFam Wall-associated receptor kinase-like 20 384 588 - -
Trre1g05965 659 Gene3D Transferase(Phosphotransferase) domain 1 384 592 - -
Trre1g05965 659 MobiDBLite consensus disorder prediction 630 659 - -
Trre1g05965 659 SMART serkin_6 307 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05965 Trre-Chr1 64035560 64038323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05965 31 653 Receptor kinase-like Gene Family AT1G25390 46.739 1.40e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre1g05965 Pkinase 4.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05965 - - aprc:113871893 792.727