Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05964 ATGACTCCATTATATTTTTTCTGCTTACTCTTGTATTGTCACTTCGCGCTGATTTTATCAGAAGGGAATGGAACCGGGTACCAATATAACTGTCCACGCACATTCAGTTGTGGAATTCGTGGGACTTTACGTTACCCTTTCACCAAGGCAGAACAACCAGACTGTGGCTTCATGCTCATACATGGCTGTGATGCCAGTTATTATTCACCCAAATACATTCAACTGGAGAAGAATGAAAAAACCGTAGAGCTAACCAGTGTCATCGACCGGAATACCATTACTCTTTCTGACCAATATTTTTACAAGCGTTTGCAAAATAATGTTTGTGATACTTTGAACCACAATTACACTCTTCCTTCCTCTTCTCCTTTGGTTTCTTTTTATATAGATTATAACGTAACTCTCTTCCGATGCAATCACGGCCACAATATCAATCCCCCTGCAAACTATTTTCGATACAAATGTCCTAAGTACGATATCTATTATGACAGTAATCCATATCCCAATGTTACTACAGAGAAGGCGCATAGCTTTTTCCCATCTTGCTCGTTACTTCAGTTTCCAACTAAAGATTTAACTGATACCAAAAACATTTTATCATTTGTATCTAGTCAGATGGTTGTTAAAATAGTATTATCTACTGACTGTGATGAGTGCTGCAACCATAGAGGAGGCCAATGTAGGCTTAATTCCAACAAAATGTTCTACTGTCACAATGGGCCGAAGAAGAAGAGAAAATATTTAAAGCTGCTACTTGGACTTGGAATAGGTTTAATCGTTACATTGTTTGCTCTGGTTATTCTTATAATTCGATGCCGCTCCAAAAGAAAGCATGCTCCATCAGACCACCAGAATCAATCGAGAAGCACATATACTGATGCGATTGATTCCCACCATAATCCAGGTCCAGAAAACGGCACTGTCTACTTTAAAATCCCTCTGTTCTCTTACAAGGAGCTAGAGGAAGCTACAAATAATTTTCACCACACCAACCAACTTGGAAGTGGAGGCTTTGGAATAGTTTACTATGGAAAACTGCGAGATGGACGTGAAGTTGCTATTAAGCGCCCATATGAACATAACTGGAGGCGAGTAGAACAGTTCACAAATGAAATTGAGATCCTTGCTCGCACACGCCACACCAATCTTGTATCCCTCTATGGCTGTACTTCATATCATAGTGATGAACTACTGCTTGTGTATGAACATGTTCCAAATCACACCGTTGCTTCTCATCTCCATGGTGATTTAGCAAGAACAGGCACACTTCCTTGGCATATCAGGATGAAAATTGCCATAGAGACAGCAAATTCATTGGCTTATCTGCATGCTTCTGGCATCATCCACCGTGACGTGAAAACCAAAAACATTCTCCTTACAAACAACTTCAGTGTTAAAGTTGCAGATTTTGGTCTTTCAAGGCTATTCCCCCTCGATATCACCCATGCTTCTACGGCGCCACAAGGGACACCAGGTTACGTTGATCCAGAATATCATCAATGCTACCAGCTTACTAGCAAGAGTGATGTATACAGTTTTGGTGTTGTGCTCATTGAGCTAATATCATCTAAGCTCGCTGTTGACATGAACAGGCATAAGGATGAGATCAACTTGTCAAACCTGGCCTTAAAGAAGATCCAAGAGGGTGCACTTACTGAGCTGGTGGATCCTTATCTTGGTTTTGATTCAGACAAAGAGGTTAAGAGGATGATAGTTTTGGTGGCAGAGTTGGCTTTTCAATGTTTACAAAGGGACAAAGAATTGAGACCTTCCATGGATGAGGTTTTGAAGGTGCTGATGAGTATTGAAAGTGGGAAGGATGTGCCTGAACATATAGTTGAAGAAGATGAACGTCCACACTCTCCACCTTCACCAGATGGAGATGAGATTGAGCTTGGATTATTCCAAAAAATGATGCCACAACCATCACCTAAAGCAGTGGTTGATAAATGGAATAGTCAATCTACTTCGTCTAATACAAGTGGTCATTAA 1992 0.4056 MTPLYFFCLLLYCHFALILSEGNGTGYQYNCPRTFSCGIRGTLRYPFTKAEQPDCGFMLIHGCDASYYSPKYIQLEKNEKTVELTSVIDRNTITLSDQYFYKRLQNNVCDTLNHNYTLPSSSPLVSFYIDYNVTLFRCNHGHNINPPANYFRYKCPKYDIYYDSNPYPNVTTEKAHSFFPSCSLLQFPTKDLTDTKNILSFVSSQMVVKIVLSTDCDECCNHRGGQCRLNSNKMFYCHNGPKKKRKYLKLLLGLGIGLIVTLFALVILIIRCRSKRKHAPSDHQNQSRSTYTDAIDSHHNPGPENGTVYFKIPLFSYKELEEATNNFHHTNQLGSGGFGIVYYGKLRDGREVAIKRPYEHNWRRVEQFTNEIEILARTRHTNLVSLYGCTSYHSDELLLVYEHVPNHTVASHLHGDLARTGTLPWHIRMKIAIETANSLAYLHASGIIHRDVKTKNILLTNNFSVKVADFGLSRLFPLDITHASTAPQGTPGYVDPEYHQCYQLTSKSDVYSFGVVLIELISSKLAVDMNRHKDEINLSNLALKKIQEGALTELVDPYLGFDSDKEVKRMIVLVAELAFQCLQRDKELRPSMDEVLKVLMSIESGKDVPEHIVEEDERPHSPPSPDGDEIELGLFQKMMPQPSPKAVVDKWNSQSTSSNTSGH 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05964 663 SMART serkin_6 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05964 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Trre1g05964 663 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 9 657 IPR044652 GO:0004672
Trre1g05964 663 MobiDBLite consensus disorder prediction 612 663 - -
Trre1g05964 663 MobiDBLite consensus disorder prediction 647 663 - -
Trre1g05964 663 FunFam Wall-associated receptor kinase-like 20 404 611 - -
Trre1g05964 663 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Trre1g05964 663 SUPERFAMILY Protein kinase-like (PK-like) 304 599 IPR011009 -
Trre1g05964 663 ProSiteProfiles Protein kinase domain profile. 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05964 663 MobiDBLite consensus disorder prediction 279 303 - -
Trre1g05964 663 Gene3D Phosphorylase Kinase; domain 1 303 403 - -
Trre1g05964 663 Gene3D Transferase(Phosphotransferase) domain 1 404 612 - -
Trre1g05964 663 Pfam Protein kinase domain 327 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05964 Trre-Chr1 64031935 64034267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05964 33 663 Receptor kinase-like Gene Family AT1G25390 45.768 3.27e-165 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre1g05964 Pkinase 8.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05964 - - psat:127098519 1051.97