Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05963 ATGAGTCTAGTTTATGAATTTATGTTTCTTTTGTTTTCACAACTCATGATGCTACTTGTGTTGGGGGGTGGAGATGAGAATAAGTACCAAGGAGATTGTCCAGCTTCATTTAGTTGCGGATATCTTGGCAATATCAGTTTCCCTTTCACTACAACTGAACGCCCGGACTGTGGCTTATTGCCAATACCCAATTGTGGTGATGCTCCACTGACGCCCAAAATGATAAAATTTCCGAATAAAGGGAAACAATTTGAGTTTGAAGTTGCAATTGTAAGTCCTCTTGAGTTTCGCAGTGGTAATGCTACTTGTACTTTTGTTTTTAGAGACAATAAACTCTACAAAATGCTGCAAAACAGAAGTTGTGATGCTTTCAGATATAATTATACTCTCCCTCCCACCACCCACTTTGTTTCTTTTCATATAGAATTTCATGCAACCTTGTTCATCTGCAACCGTGCTCTCCATGTAAAGCCTCCATCATATATGCATAACTATACAAAGTGTCCTCTGAACGAGCTCTACTACCAGCCTTACCACTATGCTGATAATGCATCTCGGACTGCTTTTACAGCTTGTACAAATGTCCAGCTTCCGGCTAAAGACTTTGCTGACTCTGACGACCCTTTTACTTTTGTTACTGCCGATATCCCAATTCAAGTAAGCATAACAAAGGAATGTGCATATTGTCACTACAACCAAAGCGGACGGTGCAAGTTTGACAGCAACAGGAAGTTTTATTGTGCCGACTATAAAAAAGGACTAAGTCATAAGGCCAAACTGGGTATAGGTTTGAGTACCGGAGTCATAGGCATGTTGTTGATTGCTTCACTGTTTCTGGTATGCTACAAACGAAAACATGCTATCTCAGTTGGACACTTCCAATCTAGTTACTCATTTTCGGATTCCTCAATAAATCCACGCCGGGAAATGGGTAGTAAATACTTTGGAGTTCCACTATTCTCCTACGACGAGCTTAGAAAAGCAACAAACAATTTTGACCATAATAAAGAACTTGGAGATGGAGGCTTTGGCACTGTCTACTTAGGGAAACTTCCCGATGGACGTGAAGTTGCTGTCAAGCGTTTATACGAACACAACTATAGGAGAGTAGAACAGTTCATGAATGAAGTTAATATCCTCACAACTTTGCGGCACAAAAATCTAGTGTCCCTCTATGGATGCACATCACGGCACAGCCGTGAACTACTGCTTGTGTATGAATATATCTCAAATGGCACAATTGCATGTCATCTCCATGGTGAATTGGCCAAGCCCGGCTTACTACCATGGTCTATACGAATTAAAATTGCTATAGAAACCGCTAATGCCTTGGCTTATCTCCATGCTTCTGGTATCATTCACCGTGACGTGAAAACCAGCAACATACTCCTCGATGACAATTTTGGTGTTAAAGTTGCAGATTTTGGCCTTTCAAGACTCTTCCCTGAAGATGCCACTCATGTCTCCACAGCTCCACAAGGGACACCTGGTTACCTTGACCCCGAGTATCACCAATTTTATCAGCTTACTAGCAAGAGTGATGTATATAGTTTTGGAGTTGTGCTCATTGAGCTAATATCATCTAAGCCTGCTGTTGATATAAACAGAAGTAGGGAAGAGATTAACTTGTCAACTCTAGCCACAAGGAAGATTCAAGAAAGTGCAATTGATGAACTGGTAGATCCTTGTCTTGGTTTTAATTCAGACAACGAGGTTAATAGGATGATAGTTTCAGTGGCAGAATTGGCTTTTCAATGTTTGCAAAGGGATAAGGAGTTGAGACCTTCTATGGAAGAAGTCTTAGATGAACTTAGGAGAATAGAGAATGGTAAGGACATGGTTGAGGTTGTAGAAGAGGCAGATGTTGATGGTGTTGGATCTTCACACAGTAATGTAAATCCACCACCAATACTAGCCTCACCTGAATGGGATGAAGTTGGATTGTTAAAGAATACGAAAAATACGAAGCATCCATCTTCACCAAACACCGTCACTGATAAATGGGAAAGTTTAAGTACTACGCCTAATGCCAGTGCTTAA 2040 0.4083 MSLVYEFMFLLFSQLMMLLVLGGGDENKYQGDCPASFSCGYLGNISFPFTTTERPDCGLLPIPNCGDAPLTPKMIKFPNKGKQFEFEVAIVSPLEFRSGNATCTFVFRDNKLYKMLQNRSCDAFRYNYTLPPTTHFVSFHIEFHATLFICNRALHVKPPSYMHNYTKCPLNELYYQPYHYADNASRTAFTACTNVQLPAKDFADSDDPFTFVTADIPIQVSITKECAYCHYNQSGRCKFDSNRKFYCADYKKGLSHKAKLGIGLSTGVIGMLLIASLFLVCYKRKHAISVGHFQSSYSFSDSSINPRREMGSKYFGVPLFSYDELRKATNNFDHNKELGDGGFGTVYLGKLPDGREVAVKRLYEHNYRRVEQFMNEVNILTTLRHKNLVSLYGCTSRHSRELLLVYEYISNGTIACHLHGELAKPGLLPWSIRIKIAIETANALAYLHASGIIHRDVKTSNILLDDNFGVKVADFGLSRLFPEDATHVSTAPQGTPGYLDPEYHQFYQLTSKSDVYSFGVVLIELISSKPAVDINRSREEINLSTLATRKIQESAIDELVDPCLGFNSDNEVNRMIVSVAELAFQCLQRDKELRPSMEEVLDELRRIENGKDMVEVVEEADVDGVGSSHSNVNPPPILASPEWDEVGLLKNTKNTKHPSSPNTVTDKWESLSTTPNASA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05963 679 MobiDBLite consensus disorder prediction 622 679 - -
Trre1g05963 679 Gene3D Phosphorylase Kinase; domain 1 304 408 - -
Trre1g05963 679 Pfam Protein kinase domain 333 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05963 679 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Trre1g05963 679 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 673 IPR044652 GO:0004672
Trre1g05963 679 SUPERFAMILY Protein kinase-like (PK-like) 309 604 IPR011009 -
Trre1g05963 679 SMART serkin_6 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05963 679 MobiDBLite consensus disorder prediction 652 679 - -
Trre1g05963 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Trre1g05963 679 ProSiteProfiles Protein kinase domain profile. 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05963 679 FunFam Wall-associated receptor kinase-like 20 409 616 - -
Trre1g05963 679 CDD STKc_IRAK 338 607 - -
Trre1g05963 679 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 305 408 - -
Trre1g05963 679 Gene3D Transferase(Phosphotransferase) domain 1 409 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05963 Trre-Chr1 64027782 64030605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05963 37 679 Receptor kinase-like Gene Family AT1G25390 45.904 1.14e-170 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre1g05963 Pkinase 5.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05963 - - gmx:100305407 811.986