Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05955 ATGGCTTCAAGGTCATATTCAAACTTGTTAGATCTTACTTCATGTGGCTCGCCGTCTTTCGGTCGCGAGAAGAAACGGCTTCCTAGAGTTGCAACTGTTGCTGGAGTACTATCTGAATTAGATGATGAATCCAACAATAGTGTTGGCTCTGATGCACCTTCCTCCATCTCTCAAGAGAGAATGATCATTGTTGGTAACCAGCTTCCATTAAAGGCACAAAGGAAAGAGGAGAATGGTAAGTGGGAATTCACTTGGGATGAGGACTCACTTCTTTTACAGCTGAAAGATGGTCTTGGTGATGATGTCGAAACAATTTATATCGGTTGTCTTAAAGAAGAAATCGATCCAATTGAGCAAGATGATGTTGCTCAGTACTTGCTTGACAATTTCAAATGTGTACCAACTTTCCTCCCTCCTGAACTTTTCACTAAATTCTATCATGGTTTCTGTAAACAGCATCTATGGCCTTTGTTTCATTACATGCTTCCACTGTCCCCTGATCTTGGTGGTCGATTCGATAGATCCCTTTGGCAGGCTTATGTTTCTGTTAACAAGATATTTGCAGATAAAGTGATGGAAGTCATTAACCCTGATGAGGATTTTGTTTGGGTTCATGACTATCACTTGATGGTTCTTCCAACATTTTTGAGAAAGAGATTTAATAGGGCAAGGCTAGGATTCTTCCTCCATAGTCCTTTTCCTTCTTCCGAGATATACCGAACCCTTCCTGTTAGGGATGAACTTCTTAGAGCTCTCCTGAATTCTGACCTTATAGGGTTTCATACTTTTGACTATGCTAGACATTTCCTCTCCTGCTGCAGTAGAATGCTAGGGATTGCTTATCAATCAAAGCGAGGCTATATCGGTCTTGAGTACTATGGAAGAACCGTTAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGTCAGCTTGAATCAGTCATGAATCTTTCTGAGACAGAAAGCAAGGTTGCGGAGTTAAGAAACAGGTTCAAAGGTCAAACAGTGATGCTTGGGGTGGATGACATGGATATCTTCAAAGGAATCAGCTTAAAACTTTTGGCAATGGAACAATTGCTTTTACAACATGCTGATAAGAGGGGAAAAGTTGTTCTGGTTCAAATCGCAAACCCTGCTAGAGGCCGCGGAAAAGATGTGCAAGAAGTGCAGTGTGAAACTTATGCAACTGTGGAAAGGATAAATAACACATTTGGAAGGCCTGGATACACACCCGTAATCTTGATTGATACAACGCTCCAGAGTTACGAGCGAATAGCTTATTATGCAATTGCAGAATGTTGTCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCTTATGAGTATATCATTTGTAGACAAGGAAATGAGAAGATAGATGGGATTTTAGGAATAAAATCAAATATCCAAAAGAAGAGCATGCTGGTGGTGTCTGAGTTCATCGGTTGCTCCCCGTCATTAAGTGGGGCAATTCGGGTGAATCCATGGAATATTGATGCTGTTGCTGAAGCTATGGATTCTGCCTTAATGGTCGCAGAGTCTGAAAAACAAATGCGGCATGAGAAGCATTATAGGTACGTTAGTACGCACGATGTTGCCTATTGGGCTCGTAGCTTCTTGCAGGATCTGGAAAGGGCTTGTAGGGATCATCTCAGGAGGAGATGCTGGGGAATTGGTTTTGGTTTAGGATTTCGAGTAATCGCTTTGGATCCAAACTTTAGAAAGCTATCCGTGGAACATATTGTTTCAGCTTATAAGAGGACAAAGCACCGAGCTATTCTTTTGGATTATGACAGTACTATGGTCCAGCTTGGATCAATTAGTACAACACCTAATGCCGAAGCTGTTTCCATCTTGAATAGCTTGTGCAATGACACCAAGAATTGTGTTTTCATTGTAAGTGGAAAGGAGAGAAAGACTCTTACTGAATGGTTTTCTTCTTGTGAAAAACTTGGACTTGCTGCAGAGCACGGCTATTTTGTGAGGACAAGTCATACTGAAGAATGGGAAACTTGTGTTTCTGTGCCTGATTTTGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATACAGAAACTACAGACGGTTCTAACATAGAGTCCAAAGAGAGCGCTCTTGTTTGGAATTACGAATTTGCAGACCGAGATTTCGGTTCATGTCAAGCTAAGGAGCTTCTTGATCATCTGGAAAGTGTTCTCGCCAATGAGCCTGTTTCAGTTAAAAGTGGCCCAAGCATTGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGTATTGTAGCCGAACGCATTCTGATAACAATGCAACAAAAGGGAGTGATTCCAGATTTCGTTCTATGCATTGGAGATGACAGATCCGATGAAGACATGTTCGGAGTAATAACGAGTGCAAGGGCATCACTATCGCCTATTGCAGATGTTTTTCCTTGTACAGTTGGTCAGAAACCAAGCAAGGCCAAATATTATTTGGAAGACACAAGTGAGATTTTGAGGATGTTGCAAGGTCTTGCCAATGCTTCTGAGCAAACTGCTGCTAGAAGTTCTTCTCAGTTTCTTCATCACTAA 2568 0.4151 MASRSYSNLLDLTSCGSPSFGREKKRLPRVATVAGVLSELDDESNNSVGSDAPSSISQERMIIVGNQLPLKAQRKEENGKWEFTWDEDSLLLQLKDGLGDDVETIYIGCLKEEIDPIEQDDVAQYLLDNFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVINPDEDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGIAYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLESVMNLSETESKVAELRNRFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHADKRGKVVLVQIANPARGRGKDVQEVQCETYATVERINNTFGRPGYTPVILIDTTLQSYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKIDGILGIKSNIQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVAESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDSTMVQLGSISTTPNAEAVSILNSLCNDTKNCVFIVSGKERKTLTEWFSSCEKLGLAAEHGYFVRTSHTEEWETCVSVPDFDWKQIAEPVMQLYTETTDGSNIESKESALVWNYEFADRDFGSCQAKELLDHLESVLANEPVSVKSGPSIVEVKPQGVSKGIVAERILITMQQKGVIPDFVLCIGDDRSDEDMFGVITSARASLSPIADVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEQTAARSSSQFLHH 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05955 855 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Trre1g05955 855 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 53 312 - -
Trre1g05955 855 NCBIfam HAD-IIB family hydrolase 594 794 IPR006379 -
Trre1g05955 855 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 47 839 IPR001830 GO:0003824|GO:0005992
Trre1g05955 855 Gene3D - 717 854 IPR023214 -
Trre1g05955 855 Gene3D - 591 702 IPR023214 -
Trre1g05955 855 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 851 - -
Trre1g05955 855 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Trre1g05955 855 SUPERFAMILY HAD-like 592 838 IPR036412 -
Trre1g05955 855 Gene3D Glycogen Phosphorylase B; 314 529 - -
Trre1g05955 855 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 549 - -
Trre1g05955 855 NCBIfam trehalose-phosphatase 590 838 IPR003337 GO:0003824|GO:0005992
Trre1g05955 855 Gene3D Glycogen Phosphorylase B; 53 313 - -
Trre1g05955 855 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Trre1g05955 855 CDD HAD_TPP 593 829 - -
Trre1g05955 855 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
Trre1g05955 855 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05955 Trre-Chr1 63941958 63945383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05955 1 850 Trehalose Biosynthesis Gene Families AT4G17770 77.257 0.0 1409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05955 K16055 - gmx:100782799 1548.87