Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05949 ATGAACAACTGGAATTCTTCTGATCAAAACCCATGTTCATGGAATGGAATCACTTGCAAAGACCAAACTGTTGTTTCCATTAGTATCCCAAAAAGGAAACTTCATGGTTCTCTTCCTTCTTCACTAGGATCTCTTTCACAGCTTCGTCATGTCAATTTCAGAAACAATGAACTCTTTGGAGCTTTGCCTCAACAGCTTTTTCAAGCTCAAGGACTTCAAAGTTTGGTTCTTTATGGAAATTCCTTTTCTGGGTCTGTTCCTAATGAGATTCAGAATCTCAGGTACCTTCAAACTTTAGATTTGTCACAAAATTTCTTTAATGGGTCATTGCCTGGTTCAATTGTTCAATGTAAGAGACTTAAAACTCTTGTTTTAAGTAGAAACAATTTTACTGGTTTTTTGCCTGATGGATTTGGTACTGGTTTGTCTTCTCTTGAAAGACTTGACCTTTCTTTCAATCAATTTAATGGTTCAATTCCTAGTGACATGGGGAATTTATCAAGTTTGCAAGGAACTGTTGATTTATCTCATAATCATTTTAGTGGTTTAATTCCAGCTAGCCTTGGAAATTTGCCTGAGAAGGTTTATATTGATCTTACTTACAATAATTTGAAAGGTCCAATACCACAAAATGGTGCTTTGATGAATAGAGGACCAACTGCTTTTATTGGTAATCCTGGTTTATGTGGTCCACCTTTGAAGAATCCATGTGGTTCTGATGTTCCTGCTACTAGTTCACCTTCCTCGAATCCAAATTTTCCTGATAATTCCCCACCAAATGGTGCTGGAAGTGATATTGGGAGAAGTGAGAAAAACAAAGGGCTAAGTAAAGGTGCTGTGGTTGGCATTGTTGTAGGTGATTTAATTGGAATTTGTCTATTAGGTTTGTTGTTCTCTTTCTTTTACTCGAGGGTTTGCGGTTTTAACCAGGATCAAGAAGAAAATGATCTTAACAAGGGAAGGAAAGGAAGGAAAGAGTGTTTTTGTTTCAGAAAGGATGGTTCTGAGGCACTATCTGATAATGTTGAGCAATATGATCTTGTTCCGTTAGATTCCCAGGTCGCTTTTGATTTGGACGAGCTTCTTAAGGCTTCAGCTTTTGTTCTTGGTAAGAGTGGAATAGGGATTATGTACAAAGTTGTTCTTGAAGAGGGGATTGCTTTGGCTGTGAGAAGATTGGGGGAGGGAGGTTCTCAGAGGTTTAAAGAGTTTCAAACAGAAGTAGAAGCTATAGGGAAGTTAAGACATCCGAATATCGCTACTCTTAGAGCCTATTATTGGTCTGTTGATGAGAAGCTTCTCATATATGACTATATACCAAATGGAAGCCTTGCTTCAGCAATTCATGGGAGGCCTGGACTTGTCACATTTACGCCGCTAACTTGGCCGGACCGATTGAAAATCATGAAAGGAACTGCAAAAGGATTGACCTATCTGCATGAATTCAGCCCGAAAAAATATGTCCATGGAGATCTGAAGCCAAGTAACATACTTCTTGGACATGACATGACACCCTACATTTCCGATTTTGGACTAGGGCGCCTCGCAAACATCGCCGGCGGCTCACCAACCCTGCAATCGAACCGAGTGGCTGCAGAAAAACTGCAAGAAAGACAAAAGAGCTTGCCCCACGAAGTGGCAGCAAATATTTTGGGAAATGGTTATCAAGCTCCAGAAGCACTAAAAGTGGTGAAGCCATCACAGAAATGGGATGTTTATTCATATGGTGTGATTTTGTTAGAATTGATCACAGGAAGATTACCTATTGTTCAAGTAGGTAATTCAGAAATGGACCTTGTTCAATGGATTCAGTTCTGCATTGAAGAGAAGAAGCCACTCTCAGATGTGTTAGATCCATATTTGGCTGAAGATGCAGATAAAGAAGAAGAGATAATTGGAGTTTTGAAAATTGCAATGGCTTGTGTTAATAGCAGCACTGAAAAGAGACCTACAATGAGGCATGTACTTGATGCTTTGGATAGATTGTCTGTTTCATCTGATTGA 2004 0.3932 MNNWNSSDQNPCSWNGITCKDQTVVSISIPKRKLHGSLPSSLGSLSQLRHVNFRNNELFGALPQQLFQAQGLQSLVLYGNSFSGSVPNEIQNLRYLQTLDLSQNFFNGSLPGSIVQCKRLKTLVLSRNNFTGFLPDGFGTGLSSLERLDLSFNQFNGSIPSDMGNLSSLQGTVDLSHNHFSGLIPASLGNLPEKVYIDLTYNNLKGPIPQNGALMNRGPTAFIGNPGLCGPPLKNPCGSDVPATSSPSSNPNFPDNSPPNGAGSDIGRSEKNKGLSKGAVVGIVVGDLIGICLLGLLFSFFYSRVCGFNQDQEENDLNKGRKGRKECFCFRKDGSEALSDNVEQYDLVPLDSQVAFDLDELLKASAFVLGKSGIGIMYKVVLEEGIALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLASAIHGRPGLVTFTPLTWPDRLKIMKGTAKGLTYLHEFSPKKYVHGDLKPSNILLGHDMTPYISDFGLGRLANIAGGSPTLQSNRVAAEKLQERQKSLPHEVAANILGNGYQAPEALKVVKPSQKWDVYSYGVILLELITGRLPIVQVGNSEMDLVQWIQFCIEEKKPLSDVLDPYLAEDADKEEEIIGVLKIAMACVNSSTEKRPTMRHVLDALDRLSVSSD 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05949 667 ProSiteProfiles Protein kinase domain profile. 363 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05949 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Trre1g05949 667 Pfam Leucine rich repeat N-terminal domain 2 19 IPR013210 -
Trre1g05949 667 FunFam Leucine-rich repeat receptor-like protein kinase 144 239 - -
Trre1g05949 667 SUPERFAMILY L domain-like 2 234 - -
Trre1g05949 667 MobiDBLite consensus disorder prediction 234 269 - -
Trre1g05949 667 Gene3D Ribonuclease Inhibitor 90 140 IPR032675 -
Trre1g05949 667 Gene3D Ribonuclease Inhibitor 1 89 IPR032675 -
Trre1g05949 667 PANTHER OS05G0588300 PROTEIN 89 662 - -
Trre1g05949 667 MobiDBLite consensus disorder prediction 239 263 - -
Trre1g05949 667 SMART LRR_typ_2 142 166 IPR003591 -
Trre1g05949 667 SMART LRR_typ_2 93 117 IPR003591 -
Trre1g05949 667 SMART LRR_typ_2 45 69 IPR003591 -
Trre1g05949 667 Pfam Protein kinase domain 369 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05949 667 Gene3D Phosphorylase Kinase; domain 1 335 438 - -
Trre1g05949 667 FunFam Leucine-rich repeat protein kinase family protein 439 665 - -
Trre1g05949 667 SMART serkin_6 368 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05949 667 FunFam Leucine-rich repeat receptor-like protein kinase 346 438 - -
Trre1g05949 667 CDD STKc_IRAK 369 662 - -
Trre1g05949 667 Pfam Leucine rich repeat 119 170 IPR001611 GO:0005515
Trre1g05949 667 Gene3D Transferase(Phosphotransferase) domain 1 439 667 - -
Trre1g05949 667 FunFam Nuclear pore complex protein NUP107 1 136 - -
Trre1g05949 667 Gene3D Ribonuclease Inhibitor 142 238 IPR032675 -
Trre1g05949 667 SUPERFAMILY Protein kinase-like (PK-like) 368 659 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05949 Trre-Chr1 63899404 63901666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05949 1 667 Receptor kinase-like Gene Family AT2G01210 68.343 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre1g05949 Pkinase 4.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05949 - - gmx:100792873 1119.76