Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05948 ATGTTCCATTTCCTCTTTTTTCTTCTCTTTTTCAACTCTCTTTCACCTTTAGCAAATTCTCTAAACCCTGAAGGCTATGTTCTCTTAACACTCAAACAAATCATCAAAGACCCACAAGGTTCCATGAACAACTGGAATTCTTCTGATCAAAACCCATGTTCATGGAATGGAATCACTTGCAAAGACCAAACTGTTGTTTCCATTAGTATCCCAAAAAGGAAACTTCATGGTTCTCTTCCTTCTTCACTAGGATCTCTTTCACAGCTTCGTCATGTCAATTTCAGAAACAATGAACTCTTTGGAGCTTTGCCTCAACAGCTTTTTCAAGCTCAAGGACTTCAAAGTTTGGTTCTTTATGGAAATTCCTTTTCTGGGTCTGTTCCTAATGAGATTCAGAATCTCAGGTACCTTCAAACTTTAGATTTGTCACAAAATTTCTTTAATGGGTCATTGCCTGGTTCAATTGTTCAATGTAAGAGACTTAAAACTCTTGTTTTAAGTAGAAACAATTTTACTGGTTTTTTGCCTGATGGATTTGGTACTGGTTTGTCTTCTCTTGAAAGACTTGACCTTTCTTTCAATCAATTTAATGGTTCAATTCCTAGTGACATGGGGAATTTATCAAGTTTGCAAGGAACTGTTGATTTATCTCATAATCATTTTAGTGGTTTAATTCCAGCTAGCCTTGGAAATTTGCCTGAGAAGGTTTATATTGATCTTACTTACAATAATTTGAAAGGTCCAATACCACAAAATGGTGCTTTGATGAATAGAGGACCAACTGCTTTTATTGGTAATCCTGGTTTATGTGGTCCACCTTTGAAGAATCCATGTGGTTCTGATGTTCCTGCTACTAGTTCACCTTCCTCGAATCCAAATTTTCCTGATAATTCCCCACCAAATGGTGCTGGAAGTGATATTGGGAGAAGTGAGAAAAACAAAGGGCTAAGTAAAGGTGCTGTGGTTGGCATTGTTGTAGGTGATTTAATTGGAATTTGTCTATTAGGTTTGTTGTTCTCTTTCTTTTACTCGAGGGTTTGCGGTTTTAACCAGGATCAAGAAGAAAATGATCTTAACAAGGGAAGGAAAGGAAGGAAAGAGTGTTTTTGTTTCAGAAAGGATGGTTCTGAGGCACTATCTGATAATGTTGAGCAATATGATCTTGTTCCGTTAGATTCCCAGGTCGCTTTTGATTTGGACGAGCTTCTTAAGGCTTCAGCTTTTGTTCTTGGTAAGAGTGGAATAGGGATTATGTACAAAGTTGTTCTTGAAGAGGGGATTGCTTTGGCTGTGAGAAGATTGGGGGAGGGAGGTTCTCAGAGGTTTAAAGAGTTTCAAACAGAAGTAGAAGCTATAGGGAAGTTAAGACATCCGAATATCGCTACTCTTAGAGCCTATTATTGGTCTGTTGATGAGAAGCTTCTCATATATGACTATATACCAAATGGAAGCCTTGCTTCAGCAATTCATGGGAGGCCTGGACTTGTCACATTTACGCCGCTAACTTGGCCGGACCGATTGAAAATCATGAAAGGAACTGCAAAAGGATTGACCTATCTGCATGAATTCAGCCCGAAAAAATATGTCCATGGAGATCTGAAGCCAAGTAACATACTTCTTGGACATGACATGACACCCTACATTTCCGATTTTGGACTAGGGCGCCTCGCAAACATCGCCGGCGGCTCACCAACCCTGCAATCGAACCGAGTGGCTGCAGAAAAACTGCAAGAAAGACAAAAGAGCTTGCCCCACGAAGTGGCAGCAAATATTTTGGGAAATGGTTATCAAGCTCCAGAAGCACTAAAAGTGGTGAAGCCATCACAGAAATGGGATGTTTATTCATATGGTGTGATTTTGTTAGAATTGATCACAGGAAGATTACCTATTGTTCAAGTAGGTAATTCAGAAATGGACCTTGTTCAATGGATTCAGTTCTGCATTGAAGAGAAGAAGCCACTCTCAGATGTGTTAGATCCATATTTGGCTGAAGATGCAGATAAAGAAGAAGAGATAATTGGAGTTTTGAAAATTGCAATGGCTTGTGTTAATAGCAGCACTGAAAAGAGACCTACAATGAGGCATGTACTTGATGCTTTGGATAGATTGTCTGTTTCATCTGATTGA 2127 0.3916 MFHFLFFLLFFNSLSPLANSLNPEGYVLLTLKQIIKDPQGSMNNWNSSDQNPCSWNGITCKDQTVVSISIPKRKLHGSLPSSLGSLSQLRHVNFRNNELFGALPQQLFQAQGLQSLVLYGNSFSGSVPNEIQNLRYLQTLDLSQNFFNGSLPGSIVQCKRLKTLVLSRNNFTGFLPDGFGTGLSSLERLDLSFNQFNGSIPSDMGNLSSLQGTVDLSHNHFSGLIPASLGNLPEKVYIDLTYNNLKGPIPQNGALMNRGPTAFIGNPGLCGPPLKNPCGSDVPATSSPSSNPNFPDNSPPNGAGSDIGRSEKNKGLSKGAVVGIVVGDLIGICLLGLLFSFFYSRVCGFNQDQEENDLNKGRKGRKECFCFRKDGSEALSDNVEQYDLVPLDSQVAFDLDELLKASAFVLGKSGIGIMYKVVLEEGIALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLASAIHGRPGLVTFTPLTWPDRLKIMKGTAKGLTYLHEFSPKKYVHGDLKPSNILLGHDMTPYISDFGLGRLANIAGGSPTLQSNRVAAEKLQERQKSLPHEVAANILGNGYQAPEALKVVKPSQKWDVYSYGVILLELITGRLPIVQVGNSEMDLVQWIQFCIEEKKPLSDVLDPYLAEDADKEEEIIGVLKIAMACVNSSTEKRPTMRHVLDALDRLSVSSD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05948 708 FunFam Leucine-rich repeat receptor-like protein kinase 387 479 - -
Trre1g05948 708 FunFam Leucine-rich repeat protein kinase family protein 480 706 - -
Trre1g05948 708 Gene3D Transferase(Phosphotransferase) domain 1 480 708 - -
Trre1g05948 708 MobiDBLite consensus disorder prediction 275 310 - -
Trre1g05948 708 MobiDBLite consensus disorder prediction 280 304 - -
Trre1g05948 708 ProSiteProfiles Protein kinase domain profile. 404 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05948 708 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 21 181 - -
Trre1g05948 708 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Trre1g05948 708 Pfam Leucine rich repeat 160 211 IPR001611 GO:0005515
Trre1g05948 708 Gene3D Ribonuclease Inhibitor 75 281 IPR032675 -
Trre1g05948 708 Gene3D Ribonuclease Inhibitor 15 74 IPR032675 -
Trre1g05948 708 SMART serkin_6 409 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05948 708 SMART LRR_typ_2 134 158 IPR003591 -
Trre1g05948 708 SMART LRR_typ_2 86 110 IPR003591 -
Trre1g05948 708 SMART LRR_typ_2 183 207 IPR003591 -
Trre1g05948 708 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 69 702 - -
Trre1g05948 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Trre1g05948 708 FunFam Leucine-rich repeat receptor-like protein kinase 185 280 - -
Trre1g05948 708 Pfam Protein kinase domain 410 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05948 708 SUPERFAMILY Protein kinase-like (PK-like) 409 700 IPR011009 -
Trre1g05948 708 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Trre1g05948 708 SUPERFAMILY L domain-like 23 275 - -
Trre1g05948 708 CDD STKc_IRAK 410 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05948 Trre-Chr1 63899404 63901789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05948 21 708 Receptor kinase-like Gene Family AT2G01210 68.052 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre1g05948 Pkinase 4.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05948 - - gmx:100792873 1159.82