Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05945 ATGGCTTCAACACACATCAGAGATATTCTAACCGCTTTCAATCCTTCTCTTGACTTCTTCGCCATATCCACCGGTGACGGTCGCATTAAGATATGGGATACACTCAAGGGACAGATTCAAACCGAGTTTGCAGACATTACTTCAACTCATCAAACTAATATTTTTGATAAACAAGGACACCTTTCTGTTGATTATACATGTATCAAATGGTTATCTTTTCAAACTAAGAGGAAAAGGAAACATTCATCCTCTTTGTTGGTGCTTGGAACGGGTAGTGGTGATGTTTTAGCACTTGATGTTTCTGCTGGTCAATTGTCTTGGAAAATTAATGATTGTCATCCCGGAGGTGTTCGAGCCATTTCGTCTTTGGCAAATGGATCAAGCTTTTACACCGCAGGTGCAGATGGAATGATATGCATGATAGATTTCACAACAGGAAATTTGCTGAAGAAATTTAAAGCCTCTTCGAAGGCAATATCTTGCATATCAGTTTCTCCGGATGGGAAGAAGGTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATGAAAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTCCGGTGTATGGTCTTCACTGAAGACGGCAAGTATATCCTCTCATCTGCCGCTGGGGAAAGAAACATTGCTGTTTGGAGATTAGATGGCGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCAATGGAGCACCCTGCTGTCTTTCTTGATAGCCGGTGCATTGATAATGGAGAACATAATGAGGCTGGCATATGCGTTTTGGCCATATCAGAAATTGGTCTTTGTTACATTTGGTTTGGAAATAGTATTGATGAACTACGAACTGCAAAGCCCACGAAAATATCATTATCTTTGGATGCCATCTCCACCAAAAATTACAAGGGTGCACTTCCTGCAATATATGCTGCAAAATTACAAAGCACCCAGAAGCCATCCTCTGGGCAGGTTTTTCTTGTTTATGGGATGCTTGTAAAACCATCATTTCAAAATATTCTAGTGCATTCCGGTACAGACGTAAAATTGAGTGTCTCCCGTGATGGTATTCTTCTTCCAACGAGTCAATCTCTTGTCAAATCTAAGAAGAGGGCAGATGTTCATAAAGTAACTGCACTAGACCGTGCTAATGCTGAGGATGCCTTGCTTCCTGTTCCAAAAGTTTTTGATTCTCATGTGGATGATTTACTTACAAGTGGTACAGCTGATTCTATGGAGATAGATGATGGGATTATCCAAAGTGAGACTGATGTAATTAGCATGGAGGACCGAATGAGATCACAAGGATTGCTTTACAGTGAAAGTGATTGTGCATCAAACTTTGAACTTTGTTCTAAATTGTTAAAGGGTATTGATCTGGAAGCTCCGCTTCCAAAGAAAAAGGTAAGAGCCGCCGTTTTGTCTATGGAACCAAGCGAAGCATTCAAGCTACTGGAAGTGTTGCTGGCTATATGGCAATCAAGGTCTTCTAGCAGAGAGTGTGTGCTTCCATGGATGTATAGCATATTAGTTATTCATGGTCATGATGCTGCTGAAGAATCCACAACGCATATGCTTGATACGGTGTACAAGATTACAAATTCTAGAGGGGCAACTCTTCAGCCTTTGTTGCAACTATCAGGTCGCCTACAACTGGTGACATCACAGATTGATAAGGCTTCTCAGAGAATAAGCCATTTGGTGGATGATCTTCAAACAGAAGGAAGTGAAGATGAGGATGAATTTTATCGCGAGGATAAAGATGAGGAAGAAGACGATGCATCTGAAATAAGTACTGACGATGAAAACTAG 1818 0.4076 MASTHIRDILTAFNPSLDFFAISTGDGRIKIWDTLKGQIQTEFADITSTHQTNIFDKQGHLSVDYTCIKWLSFQTKRKRKHSSSLLVLGTGSGDVLALDVSAGQLSWKINDCHPGGVRAISSLANGSSFYTAGADGMICMIDFTTGNLLKKFKASSKAISCISVSPDGKKVATAAAQLKIFNCSNEKKIQKFSGHPGSVRCMVFTEDGKYILSSAAGERNIAVWRLDGAKKQSASCVLAMEHPAVFLDSRCIDNGEHNEAGICVLAISEIGLCYIWFGNSIDELRTAKPTKISLSLDAISTKNYKGALPAIYAAKLQSTQKPSSGQVFLVYGMLVKPSFQNILVHSGTDVKLSVSRDGILLPTSQSLVKSKKRADVHKVTALDRANAEDALLPVPKVFDSHVDDLLTSGTADSMEIDDGIIQSETDVISMEDRMRSQGLLYSESDCASNFELCSKLLKGIDLEAPLPKKKVRAAVLSMEPSEAFKLLEVLLAIWQSRSSSRECVLPWMYSILVIHGHDAAEESTTHMLDTVYKITNSRGATLQPLLQLSGRLQLVTSQIDKASQRISHLVDDLQTEGSEDEDEFYREDKDEEEDDASEISTDDEN 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05945 605 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 234 IPR001680 GO:0005515
Trre1g05945 605 Pfam Dip2/Utp12 Family 467 556 IPR007148 -
Trre1g05945 605 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Trre1g05945 605 MobiDBLite consensus disorder prediction 570 605 - -
Trre1g05945 605 SMART WD40_4 2 33 IPR001680 GO:0005515
Trre1g05945 605 SMART WD40_4 185 225 IPR001680 GO:0005515
Trre1g05945 605 SMART WD40_4 102 142 IPR001680 GO:0005515
Trre1g05945 605 SMART WD40_4 145 182 IPR001680 GO:0005515
Trre1g05945 605 Gene3D - 4 139 IPR015943 GO:0005515
Trre1g05945 605 Gene3D - 140 276 IPR015943 GO:0005515
Trre1g05945 605 SUPERFAMILY WD40 repeat-like 12 232 IPR036322 GO:0005515
Trre1g05945 605 MobiDBLite consensus disorder prediction 575 605 - -
Trre1g05945 605 PANTHER OS03G0300300 PROTEIN 3 604 - -
Trre1g05945 605 Coils Coil 601 605 - -
Trre1g05945 605 Pfam WD domain, G-beta repeat 187 224 IPR001680 GO:0005515
Trre1g05945 605 Pfam WD domain, G-beta repeat 5 33 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05945 Trre-Chr1 63881128 63887910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05945 107 226 U-box Gene Family AT2G33340 31.452 3.41e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05945 K14546 - gmx:100784148 852.818