Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05933 ATGGATAAAGAAATTAAATCATTTAAGGATCTGGGCTTATCGGAGGAATTGATCGAAGCTTGTGACAAATTGGGTTGGAAGACTCCGCTAAAGATTCAAATACAAGCAATTCCCCCGGCTCTCCAAGGAAAAGATGTGATTGGACTTGCCCAAACGGGTTCTGGTAAAACTGCCGCTTTTGCTCTTCCTATATTGCATGCACTCTTAGAAGACCCAAACCCTTTTTTCGCTTGTGTGTTGTCTCCCACAAGGGAGCTTGCTATTCAAATTTCTCAACAGTTTGAAGCTCTAGGTTCTGTAATTAAGGTCAAGTGTGCTGTGCTTGTTGGAGGGTTTCCCATGGCAAAACAATCCATCAATTTAGCAACGAAGCCTCATATTATTGTTGGGACTCCTGGACGTGTCTTGGATCACCTAAAAAACACCAAAGGATTTTCTCTGGGTAAATTAAAATACTTGGTCTTAGATGAAGCAGACAGGTTGTTGAATGAGGATTTTGAGGAATCACTTAATGAGATTTTAGGAATGATCCCTCGCAAGCGTAGGACATTCCTTTTTTCTGCTACGATGACAAAGAAGGTCGAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCATCGACCAAGTATTCTACTGCAAACACACTGAAGCAACAATATCGTTTCGTGCCAGCAAAACACAAGGATTGCTACCTCGTATACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGGACATGTGATGCAACTCGGCTTCTTGCTTTGATTCTTAGGAATCTCGGTTTGAAAGCCATCCCAATTAATGGTCATATGAATCAGCTAAAGCGACTTGGAGCCTTGAATAAGTTCAAGTCTGGGGATTGCAATATTCTCCTCTGTACCGACGTAGCTAGTAGGGGACTGGATATTCCAGAAGTAGATATGGTGATTAACTATGATATTCCCACAAACTCCAAAGATTATATACATCGCGTGGGAAGGACTGCTCGGGCAGGGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTAGAGTGGCACATTCAGATAGAGAAGCTTATTGGCAAGAAGCTACTAGAGTATCCTGCAAAAGAAGAGGAAGTTTTGCTTTTGGAAAAGCGTGTTAGTGAGGCAAAAAGATTAGCTGTAGCTGTAACGAAAATGAAGGAAAGTGGAGGGAAGAAGAAACGGAGGGGCGAAGAAGATTCAGGAGAGGAGGATACTGACAAATACTTTGGTCTAAAAGACAGAAAATCTTCTAAGAAGTTTAGAAGAAAATAA 1311 0.4188 MDKEIKSFKDLGLSEELIEACDKLGWKTPLKIQIQAIPPALQGKDVIGLAQTGSGKTAAFALPILHALLEDPNPFFACVLSPTRELAIQISQQFEALGSVIKVKCAVLVGGFPMAKQSINLATKPHIIVGTPGRVLDHLKNTKGFSLGKLKYLVLDEADRLLNEDFEESLNEILGMIPRKRRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTANTLKQQYRFVPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMNQLKRLGALNKFKSGDCNILLCTDVASRGLDIPEVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWHIQIEKLIGKKLLEYPAKEEEVLLLEKRVSEAKRLAVAVTKMKESGGKKKRRGEEDSGEEDTDKYFGLKDRKSSKKFRRK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05933 436 Gene3D - 214 386 IPR027417 -
Trre1g05933 436 MobiDBLite consensus disorder prediction 397 436 - -
Trre1g05933 436 Gene3D - 1 213 IPR027417 -
Trre1g05933 436 MobiDBLite consensus disorder prediction 397 426 - -
Trre1g05933 436 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 235 379 IPR001650 -
Trre1g05933 436 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 37 208 IPR014001 -
Trre1g05933 436 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 6 34 IPR014014 GO:0003724
Trre1g05933 436 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 154 162 IPR000629 -
Trre1g05933 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 361 IPR027417 -
Trre1g05933 436 SMART ultradead3 25 224 IPR014001 -
Trre1g05933 436 CDD SF2_C_DEAD 220 349 - -
Trre1g05933 436 Pfam Helicase conserved C-terminal domain 235 340 IPR001650 -
Trre1g05933 436 SMART helicmild6 259 340 IPR001650 -
Trre1g05933 436 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 395 - -
Trre1g05933 436 Pfam DEAD/DEAH box helicase 31 197 IPR011545 GO:0003676|GO:0005524
Trre1g05933 436 CDD DEADc_DDX47 7 209 IPR044765 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05933 Trre-Chr1 63756739 63762981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05933 5 372 Eukaryotic Initiation Factors Gene Family AT3G19760 32.258 7.50e-65 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05933 K14777 - gmx:100775796 689.878