Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05931 ATGGGTTTACAAAACCAGCTAAACGACGTGTCATCGGATTCAATTCCGTTACTAGTTTTGATGCACATCGCCACCTGCGTCAATTACATCCGTTCGATGCTTCTCACTTTCTTCCAATCCATCGGTCTCTCACGTCTTCAAACCGATCAGATCGTCGACGACCACTTCTTAGCCGCCGTTGGATCAGGACTCGCCGGACTCATCATGCTCTCCGATCAACTCACTCTCAACAACCAATTCTTCTACACATACGAAGATGCTGCTTCCCCAGATAATCACCGTTGCGTCTTTTGCCAATCAAATTTCGAAAACGGCGATCACGTTCGGAAGCTTCCTTGCCGCCACGTCTTCCACCGTCACTGTCTTAACGGTTGGTTCCATCGGTACAACTTCAATTGTCCGTTATGCCGCTCAACGCTTATCTCCGATGAGCGCGTGGCGCTCACTGAACGCCGTGTCGGTCGCCAACTCATCTCATGGTTCACACTTCGCTGA 495 0.501 MGLQNQLNDVSSDSIPLLVLMHIATCVNYIRSMLLTFFQSIGLSRLQTDQIVDDHFLAAVGSGLAGLIMLSDQLTLNNQFFYTYEDAASPDNHRCVFCQSNFENGDHVRKLPCRHVFHRHCLNGWFHRYNFNCPLCRSTLISDERVALTERRVGRQLISWFTLR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05931 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Trre1g05931 164 SMART ring_2 95 136 IPR001841 -
Trre1g05931 164 SUPERFAMILY RING/U-box 75 142 - -
Trre1g05931 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 84 146 - -
Trre1g05931 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Trre1g05931 164 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05931 Trre-Chr1 63719981 63720475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05931 1 163 C3H Transcription Factor Family AT1G15100 50.307 1.08e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05931 K16282 - gmx:100803789 246.514