Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05906 ATGATAACGCACCGGAGGACCACCAAGATTCTTCCAGCCGCAGAATCATCCGTTCTGAGTTTCTCAAACTCAAGCGTTACTCCTTCTCAGTTTGTTTCCTCTCTTCTCAAACACTATGCTCACCCACCTAACACTTCAATTGACTGGCAAAAACTTGGCATTGCTGTTTCCCCCATTTTCCTCACGGTTCATGGCTCTTCTACCATGCTTGGTCCCATGGAAAATCAGTTGAAACAACGCAAAGCAATCGTCTCTAGAAAGCGAGCTGCTAGGCCTGAACAGCTGGATGATGCTGTTGGAGGGGAAAAAACGGATACTGACAAAAACATGTCAACCATGTTTAACATATTAAGGGAAAAGAAAAGGGTTCTGCTTGAACACCTCATTTTGAACAGAATTTCATTTGCTCAGACAGTGGAAAACTTGTTTACTCTCTCATTTTTAGTGAAAGATGGCCGTGCTGAGATCATTATGGATAAAAACCGTTTGCATTATGTTTCACCAAAAAATGCTCCGGCTGCCAACGCTGTAATGTCAAAAGAAGTTTCTTACACTCATTTTGTCTTCAGATATGATTTCAATGACTGGAAGATAATGAAGGATATTGTGGCTGAAGGCGAAGAGTTAATGCCACAAAGGATTCAATACAGCAATGTGGTTGACTCACAGGCAGACATGAGTGGTGACGATTCCCAATCAGCTCTGCCTGTAACTCCGATCAGAAAGATATCTCGGAACCGAGGACGGGTTCTGCAAGAGGAAAATATTGTGGAAGAATTGCCTGAAGGCAAAGGTGAAAATGCTTCCAGAGCTGCTGCAATCCGAAGGTGTAAGCGTAAACTTCCTTAA 849 0.4299 MITHRRTTKILPAAESSVLSFSNSSVTPSQFVSSLLKHYAHPPNTSIDWQKLGIAVSPIFLTVHGSSTMLGPMENQLKQRKAIVSRKRAARPEQLDDAVGGEKTDTDKNMSTMFNILREKKRVLLEHLILNRISFAQTVENLFTLSFLVKDGRAEIIMDKNRLHYVSPKNAPAANAVMSKEVSYTHFVFRYDFNDWKIMKDIVAEGEELMPQRIQYSNVVDSQADMSGDDSQSALPVTPIRKISRNRGRVLQEENIVEELPEGKGENASRAAAIRRCKRKLP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05906 282 PANTHER UNCHARACTERIZED 20 262 IPR027786 GO:0005634|GO:0006281|GO:0030915
Trre1g05906 282 Pfam Nse4 C-terminal 125 209 IPR014854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05906 Trre-Chr1 63516110 63517929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05906 16 281 Non-SMC Element family AT1G51130 50.355 1.78e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05906 K22825 - gmx:100792117 372.474