Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05879 ATGGGGGATCACTTTGATTTACTGGTCGATCGGTTGCTTACTGAATCGACATTAGAAGCTGCACTCGAAAGCAGAATGCGAGCGTTGCAGGCTGCATCTTCGGCCGTGGATAACACGGAAGTTGATATCTCTTTGTTGAAGATAGGTCTGGATGATGTCAAATGTTCGGGGAAGATGGTTGAATGTAGGATATGTCATGATGATGATGATGATTCCAATATGGAGACACCTTGCTCCTGTTGTGGTAGTTTGAAGTACGCCCACCGTAGATGTATACAAAGGTGGTGTAATGAGAAGGGCGACACCATCTGTGAGATATGCCACCAGTCGTTCAAGCCTGGTTATACAGCTCCTCCCCCGCTATTTCAGTTTGGACGTATTCCAATGAGTTTTAGGGGAAATTGGGAAATTTCACGAAGAGACTTAAATAGTGCTCATTTGGTTAGCATGGTTCCCACTGACCAGAACATTATCAATTCTAACTATGATCAATATTCAGCCTCTCCTTCGGAAAGTTTGATATGGTGTCGTTCAGTTGCTGTCATTTTCATGGTTCTTCTGGTTTTAAGACATACACTTCCCCTCGTAATTAGTGGAAGTAAAGACTATTATTTCCCACTTTTCATGGTGTTATTATTTCGGAGTGCTGGAATCGTCGTACCTGTATACTTCATGGCTCGAGCAGTGGCACTAATCCAACGACATCGGAGACAACATCGAGAGCATCCTAGTGTCTTGGTCAGTTCATCTGATGACGAAATCGAGCAAGAAGATTTGCAGCCTCAGGCACATATCATACATTTAGTCTAA 810 0.4333 MGDHFDLLVDRLLTESTLEAALESRMRALQAASSAVDNTEVDISLLKIGLDDVKCSGKMVECRICHDDDDDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTICEICHQSFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSAHLVSMVPTDQNIINSNYDQYSASPSESLIWCRSVAVIFMVLLVLRHTLPLVISGSKDYYFPLFMVLLFRSAGIVVPVYFMARAVALIQRHRRQHREHPSVLVSSSDDEIEQEDLQPQAHIIHLV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05879 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Trre1g05879 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Trre1g05879 269 SMART ringv_2 61 108 IPR011016 GO:0008270
Trre1g05879 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 113 IPR013083 -
Trre1g05879 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Trre1g05879 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Trre1g05879 269 FunFam Zinc finger family protein 51 117 - -
Trre1g05879 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Trre1g05879 269 SUPERFAMILY RING/U-box 60 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05879 Trre-Chr1 63384744 63387063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05879 32 107 C3H Transcription Factor Family AT5G05830 35.714 7.99e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05879 - - vun:114190540 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05879 1 63384744 63387063 Trre1g05879 1 63384744 63387063 ECH