Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05872 ATGGTGACCAAGGCAAAGAAAGCTATGAACAAGAGTTTGAAAAAGGTCAATGCTATTAAACCATCTGAAACTGCTGATTTTTTGCCTTTGGAAGGCGGTCCTGGTCGCAAACTTCGTGAACTTAAACCGCTGGAGAACACTTCCCCTGTTTTGTATATCGGTAGGATTCCACATGGGTTCTATGAGAAGGAGATGGAAGCTTATTTTGGACAATTTGGTACTATCAAGAGATTGAGAATTGCCAGAAATAAAAAGACTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCCGAGGTAGCAAAAATTGTAGCCGATACTATGCACAATTATTTACTTTTCGAACACCTTCTTCAAGTTTTCGTCATACCTTTGGAACAAGTTCATCCCAGATTATGGAAAGGATTCAATTACCGTTACAAACCCTTGGACTCTCTCCAAATTGAACGAGAGCGACATGACAAGGAAAGAACATTGGAAGAACACAGGAAGTTGGTTGAAAGGGTCATGAAACGTGACAAAAAACGACGTAAAAGGATAGAGGCTGCAGGCATTGATTATGAATGTCCTGAGATTGTCGGTAACCTCCAGTCTGTTCCAAAGAAGATAAAGTTTGAAGACTGA 630 0.3984 MVTKAKKAMNKSLKKVNAIKPSETADFLPLEGGPGRKLRELKPLENTSPVLYIGRIPHGFYEKEMEAYFGQFGTIKRLRIARNKKTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVIPLEQVHPRLWKGFNYRYKPLDSLQIERERHDKERTLEEHRKLVERVMKRDKKRRKRIEAAGIDYECPEIVGNLQSVPKKIKFED 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05872 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 208 - -
Trre1g05872 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 122 IPR000504 GO:0003723
Trre1g05872 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Trre1g05872 209 SUPERFAMILY RNA-binding domain, RBD 50 195 IPR035979 GO:0003676
Trre1g05872 209 CDD RRM_NIFK_like 50 122 - -
Trre1g05872 209 Gene3D - 2 123 IPR012677 -
Trre1g05872 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Trre1g05872 209 Coils Coil 150 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05872 Trre-Chr1 63327591 63329970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05872 51 122 Eukaryotic Initiation Factors Gene Family AT1G71770 31.944 6.44e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05872 K14838 - gmx:100778780 330.872