Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05868 ATGGTAGTTTTTGGCGGGAAAAAGGTTCATCAAATTGTCACCGGCATCGGTAGCAACGGCCTTGGCCAGGTAGTCGTCGCCGTCGCTTTCTCCTTCCTTGTTCGCATCTTCTCCGCTCCCGGTCCCGCTCTCTTACCGGAGAACGACGATGATATAGACGACGATGTTCCAAACAACGATTCACCCGACGGTGAAACCCCTACTCCCACCGGAAAGGTCACGCCGGTCACAATCCGTTGGAATAATATTAATTGCTCCATTTCTGATAAATCCTCCAACTCCGTGAGGTTTTTGCTTAAAAATTTGAGTGGAGAAGCTAAACCAGGAAGATTATTAGCGATAATGGGGCCTTCAGGTTCAGGGAAGACAACATTGCTTAATGTTCTTGCTGGTCAACTGGCAGCGTCGCCTCGGCTTCATTTGAGTGGCCTTTTGGAGTTCAATGGAAAGCCTAGTTCTAGAAACACTTACAAGTTTGCTTATGTGAGACAGGAGGATCTATTCTTCTCACAGCTTACTGTGAGGGAAACATTGTCTCTTGCTATAGAATTACAGCTTCCCCACATATCTTCTGTTGAAGAGAGGGATGAATATGTCAACAATCTCCTTTTCAAAATAGGCTTGGTCAGCTGTGCTGATACTAATGTTGGTGATGCAAAAGTTCGCGGAATCAGTGGCGGCGAAAAGAAACGTTTATCCTTGGCATGTGAACTGCTTGCGAGCCCATCTGTTATATTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAGGTTATGGAAACTCTACGACAACTTGCACTCGATGGTCATACTGTAATTTGCTCTATACATCAGCCAAGAGGTTCAGTGTACACCAAATTCGATGACATTATCTTGCTAACTGATGGTTCCCTTGTTTATGCTGGTCCTGCTGGTGATGAACCATTGGCATACTTCTCAAAATTCGGGTACCACTGCTCTGATCATGTTAATCCTGCAGAATTTTTGGCCGATCTTATATCCATAGACTACAGTTCTTCTGATAGTGTCTATTCCTCACAAAAAAGGATCAATGGGCTTGTTGAGTCATTCTCACAAAGACTGTCTACAATAATATATGCTACACCGATTACTCTAGATGATCTCTCAAAAAGTAGGAAGAGAATCCGCAAGAGGACTGTAGAAAAAAGAAAAGGGGGATGGTGGAAGCAATTCTGGTTGCTTCTTAGACGAGCATGGATGCAGGCTTCCCGTGATGCACCTACCAACAAAGTTCGGGCACGGATGTCAATTGCATCAGCAATTATCTTTGGGTCAGTTTTTTGGAGAATGGGAAAATCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTGCTGCAATAAACACAGCTATGGCTGCTCTCACCAAGACTGTAGGCGTGTTTCCGAAGGAACGATCAATTGTTGATAGAGAACGTGCTAAAGGCTCCTATTCCTTGGGCCCCTATCTGTTTTCAAAACTGTTGGCTGAGGCTCCCATTGGAGCAGCATTTCCATTAATGTTCGGTGCTGTTTTATACCCAATGGCACGACTTCATCCCACTTTGATGAGATTTGGGAAATTCTGTGGAATCGTTACTGCAGAATCTTTTGCTGCATCTGCAATGGGTCTTACTGTTGGTGCTATGGTTCCAACCACCGAAGCAGCAATGGCAGTAGGCCCCTCTCTTATGACAGTTTTTATAGTATTTGGTGGCTACTATGTCAACACCGAGAATACCCCAATTATCTTCCGATGGATTCCTAGTGTTTCTCTTATTAGATGGGCCTTTCAAGGACTTTGCATCAACGAATTTCATGGTCTTCAATTTGATCATCAGAATTCATTTGATATTCAAACCGGAGAACAGGCACTAGAGCGTCTTTCCTTTGGAGGAAGTACAATTAGGGATACGTTGTTAGCGCAAAATAGAATATTGTTATTTTGGTATTGCACCACCTATCTTCTCCTTGAGAAAAACAAGCCCAAATACCAGCAACTTGAAACAACCCCTCCTATCCACGGCAAACCGTATTTAAAACCCGAGGAGTTAAATTCTGAACAAGTTGATCAGACACATGAAGCACCTGAGGTCAGCCAAACTGGTTCCGAGTCCGACGAGCCCCTTGAGTCAACTGAAGCAGGCCCTGTTGGCTCTTTTATCCTGGAAGGTTTGTAA 2196 0.4426 MVVFGGKKVHQIVTGIGSNGLGQVVVAVAFSFLVRIFSAPGPALLPENDDDIDDDVPNNDSPDGETPTPTGKVTPVTIRWNNINCSISDKSSNSVRFLLKNLSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGLLEFNGKPSSRNTYKFAYVRQEDLFFSQLTVRETLSLAIELQLPHISSVEERDEYVNNLLFKIGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLRQLALDGHTVICSIHQPRGSVYTKFDDIILLTDGSLVYAGPAGDEPLAYFSKFGYHCSDHVNPAEFLADLISIDYSSSDSVYSSQKRINGLVESFSQRLSTIIYATPITLDDLSKSRKRIRKRTVEKRKGGWWKQFWLLLRRAWMQASRDAPTNKVRARMSIASAIIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERSIVDRERAKGSYSLGPYLFSKLLAEAPIGAAFPLMFGAVLYPMARLHPTLMRFGKFCGIVTAESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNTENTPIIFRWIPSVSLIRWAFQGLCINEFHGLQFDHQNSFDIQTGEQALERLSFGGSTIRDTLLAQNRILLFWYCTTYLLLEKNKPKYQQLETTPPIHGKPYLKPEELNSEQVDQTHEAPEVSQTGSESDEPLESTEAGPVGSFILEGL 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05868 731 CDD ABCG_EPDR 75 306 - -
Trre1g05868 731 Pfam ABC transporter 99 251 IPR003439 GO:0005524
Trre1g05868 731 FunFam ABC transporter G family member 7 76 314 - -
Trre1g05868 731 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524|GO:0016887
Trre1g05868 731 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 78 324 IPR003439 GO:0005524
Trre1g05868 731 Gene3D - 71 312 IPR027417 -
Trre1g05868 731 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 68 626 - -
Trre1g05868 731 SMART AAA_5 108 301 IPR003593 GO:0016887
Trre1g05868 731 MobiDBLite consensus disorder prediction 674 731 - -
Trre1g05868 731 MobiDBLite consensus disorder prediction 45 74 - -
Trre1g05868 731 MobiDBLite consensus disorder prediction 697 714 - -
Trre1g05868 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 310 IPR027417 -
Trre1g05868 731 Pfam ABC-2 type transporter 401 611 IPR013525 GO:0016020|GO:0140359
Trre1g05868 731 Pfam ABC-2 type transporter 281 339 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05868 Trre-Chr1 63311323 63317990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05868 98 306 Calmodulin-binding Proteins AT2G36910 29.577 2.24e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05868 K05681 - gmx:100788256 1206.05