Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05864 ATGGCACCGAGACATGATTCGATTTCTGATATTTCACCTGCCAAGGAAAATTGGAATCTGATAGTCAGAGTCGTGCGTCTTTGGCATGTTAAAGACATGGCCAAAGACAAGTTACCATTCTCCATGGAGATGGTGCTCATGGATTCAAAAGGTGATCGGATTCACGCTACAGTTCGTCGGACTTTAATTTATAAGTTTGAGAAGGATCTTATGGAGGACAACGTATTTGCCATTTCTAACTTCGGTGTTGCGGCAAATATTGGTTCATATCGAACCACAAGACATCCTTATAAACTGAATTTTCAATTTGCAACAAAAATTAAAGTTTCTGAAAATCGTTCTGTCCCACCAAACTTATACTTGATTGGTAATCCAAGTGATATTTTTTCTGGTCAGTATGATACTGACTATTTGGTTGATCTTATGGGAATGTTGACTAGGGTCGGTGTCGAGAAAACCTACGAGAGAAATGGAACACAATCCAAAATGGTTGTTATAGAGCTGGACAATGATGGATACCGTTTCAAATGTACCTTATTTGGTCCGTATGTGGACATGCTGAATTCTTTTCTTGCATCCGGAGAGACCGAGAATGTCATTGCGGTCATCCTTTTGGCTAAAGTTAAAAATTTTCAAGGTAGGGCCACTGTTCAAAACACAATATACTCAACAAAAATACTTTTCAATCCGGCGTTCTCTGTTGCAGTTGATCTGAAAAAAAGGATGGTTGAGAAAAATGATACCCCTTCGTCGGGTATAACTCGGCTGCAAGATAATCCAAAGCTTTCCTTTATGGAAGACTTTATACAAGTCAATCCATATGCAACAATTGAGGGCTTGAAAGAATCCCGTGTGGAGGGTGTGTTTGTTGTCTGTGCCACAATCAAATTCATTGTCGATGATAATGATTGGTGGTATACTGCCTGCACCTGTAACAAGAAAGTATATCCCGACGAGAGGATGTACTTTTGCGAGAAGTGTAACAAGCACGTTCTCAATGTTACCCCAAGGTATAGGATAAAGGTAAGGGTCATTGACTCATCTGATTCGGCTACATTTGTAATCTTTGATCGTGATGGTGTTGATTTATTCAACATGACCTGTGCTGACATGATAGAATCAGTTGGAATGGATGCAAATTCTACTGGAATTCCAAAACTCATACTTGATTTGGTTGATAAGACCTATATCTTCAAGGTTGAGACAAATATTAGTGAGGAGACGAGATATGAGAAATCATATCGTGTGAAGAAGATGACTGCTGATGTTGAAGTTATGGCTAAATTTAATGCCAAATACTCTATTCCTCAGCTGAGTGAATTTTTGCTATCTAAATCGCCAGACAATGTATGTATTGCACTGTTTTTTGGAAAGATGACATATTGGAAAGGGATACCTACTGTTCAAAATTTTGGGAAGTATACAAAGTTGATATTCAATCCAAATTATGAAGCAGCTCTAGATTTAAAGCAAAGGCTGGACATCACATTTTCACCATCTTATGGAGTATATGAAACAAATGAAACTACAGAAATGCATATATTAAAACAGTGGTTGTACTCAAACACAAGATCTACTATATATGATCTTCGTACATGTGCAATGGAGTCGATGTGTGTCATATTGGGCAAAGTTCAACCAATGCAACCTGGTCGTCATTGGTGTTATCTATCCTGTGTATGCAATATAAAGGTGATTCCTGACGGTCACAGGTATATGATAAGCCTTCGTGTGAGTGACCCCACAGCATCGGCTACATTTGTAATGCATGATCGTATGGCTGCTGAGTTTTTTGGAATGTCATGCAGTCAAATGCTTGAAATTGATGGAAAGGATGCAGTGTCTGACTATGTCCCTGAGCCAATCTCAAAAATGGTGGTTAAATGTTATTTATTCATGGTTTTTACCAAAGTTAGTCCAGGAGATGATGCAGATAAATGCTATCCAGTTTCGAAAGTCACAGACGATGATGCATTCATACAATCATTAAAACGCCAACAATCTTTAGAATAG 2013 0.384 MAPRHDSISDISPAKENWNLIVRVVRLWHVKDMAKDKLPFSMEMVLMDSKGDRIHATVRRTLIYKFEKDLMEDNVFAISNFGVAANIGSYRTTRHPYKLNFQFATKIKVSENRSVPPNLYLIGNPSDIFSGQYDTDYLVDLMGMLTRVGVEKTYERNGTQSKMVVIELDNDGYRFKCTLFGPYVDMLNSFLASGETENVIAVILLAKVKNFQGRATVQNTIYSTKILFNPAFSVAVDLKKRMVEKNDTPSSGITRLQDNPKLSFMEDFIQVNPYATIEGLKESRVEGVFVVCATIKFIVDDNDWWYTACTCNKKVYPDERMYFCEKCNKHVLNVTPRYRIKVRVIDSSDSATFVIFDRDGVDLFNMTCADMIESVGMDANSTGIPKLILDLVDKTYIFKVETNISEETRYEKSYRVKKMTADVEVMAKFNAKYSIPQLSEFLLSKSPDNVCIALFFGKMTYWKGIPTVQNFGKYTKLIFNPNYEAALDLKQRLDITFSPSYGVYETNETTEMHILKQWLYSNTRSTIYDLRTCAMESMCVILGKVQPMQPGRHWCYLSCVCNIKVIPDGHRYMISLRVSDPTASATFVMHDRMAAEFFGMSCSQMLEIDGKDAVSDYVPEPISKMVVKCYLFMVFTKVSPGDDADKCYPVSKVTDDDAFIQSLKRQQSLE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05864 670 SUPERFAMILY Nucleic acid-binding proteins 536 657 IPR012340 -
Trre1g05864 670 SUPERFAMILY Nucleic acid-binding proteins 279 408 IPR012340 -
Trre1g05864 670 CDD RPA1_DBD_C 278 440 IPR047192 -
Trre1g05864 670 CDD RPA1_DBD_A_like 22 107 - -
Trre1g05864 670 SUPERFAMILY Nucleic acid-binding proteins 5 114 IPR012340 -
Trre1g05864 670 Gene3D - 6 112 IPR012340 -
Trre1g05864 670 Gene3D - 124 250 IPR012340 -
Trre1g05864 670 Pfam Replication factor-A C terminal domain 289 424 IPR013955 -
Trre1g05864 670 PANTHER OS03G0429900 PROTEIN 7 409 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre1g05864 670 Gene3D - 269 435 IPR012340 -
Trre1g05864 670 Gene3D - 516 664 IPR012340 -
Trre1g05864 670 SUPERFAMILY Nucleic acid-binding proteins 132 241 IPR012340 -
Trre1g05864 670 CDD RPA1_DBD_B_like 140 242 - -
Trre1g05864 670 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05864 Trre-Chr1 63293535 63299815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05864 3 426 Core DNA Replication Machinery Family AT4G19130 22.449 2.16e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05864 - - tpra:123887545 567.77