Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05860 ATGATGAAGATTTCCCAAAACAACGAGTCTTCTAGAGTTGTTGGCGATAATTCATATGCATTGGAGTATCTTTTGACCGTAAAAGTTGCATTAATCAAACAGAACAGTACTAAAAAGTATCGTGAGTTTTTCAATCTCCTAAAAGATTATTTAGAGCTTAGAAGAAGAAGAAGAAGTAGTCCTTGTTATGATGATTTATTAAACAATGTCAAAGCAAGAGTGAAAGAGGTGCTTAAAGGACATAGAGATTTAATTTTGGGATTCAACCCCTTGCTGCCAAAGGAACATCAAATCACGCTTCCTTTTCAACTCGAGACCTCCGGTAAAAAGGTGAAGGTAGAAGAGAACCGTGAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAACACTAGACCTTGACGACCACTTTCAATTTGCCGATAGTCTACCGGTTAGATTCATATACCATGCACAGATGGATGTTGAGATAATTACAATAAAAGATGGAACTCCTCCCGTGGTCAAGTCTACTGGATTCACAATTAATTGA 531 0.3729 MMKISQNNESSRVVGDNSYALEYLLTVKVALIKQNSTKKYREFFNLLKDYLELRRRRRSSPCYDDLLNNVKARVKEVLKGHRDLILGFNPLLPKEHQITLPFQLETSGKKVKVEENRELPWDVLDIISKTLDLDDHFQFADSLPVRFIYHAQMDVEIITIKDGTPPVVKSTGFTIN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05860 176 PANTHER SIN3B-RELATED 19 147 IPR039774 GO:0003714
Trre1g05860 176 ProSiteProfiles PAH domain profile. 12 95 IPR003822 GO:0006355
Trre1g05860 176 Gene3D Paired amphipathic helix 20 93 IPR036600 GO:0006355
Trre1g05860 176 Pfam Paired amphipathic helix repeat 39 89 IPR003822 GO:0006355
Trre1g05860 176 SUPERFAMILY PAH2 domain 18 95 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05860 Trre-Chr1 63276377 63278605 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05860 7 100 WRKY Transcription Factor Family AT4G12020 36.458 2.36e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g05860 PAH 7.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05860 K11644 - tpra:123916766 108.612