Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05859 ATGGTAGTTTTTGGCGGGAAAAAGGTTCATCAAATTGTCACCGGCATCGGTAGCAACGGCCTTGGCCAGGTAGTCGTCGCCGTCGCTTTCTCCTTCCTTGTTCGCATCTTCTCCGCTCCCGGTCCCGCTCTCTTACCGGAGAACGACGATGATATAGACGACGATGTTCCAAACAACGATTCACCCGACGGTGAAACCCCTACTCCCACCGGAAAGGTCACGCCGGTCACAATCCGTTGGAATAATATTAATTGCTCCATTTCTGATAAATCCTCCAACTCCGTGAGGTTTTTGCTTAAAAATTTGAGTGGAGAAGCTAAACCAGGAAGATTATTAGCGATAATGGGGCCTTCAGGTTCAGGGAAGACAACATTGCTTAATGTTCTTGCTGGTCAACTGGCAGCGTCGCCTCGGCTTCATTTGAGTGGCCTTTTGGAGTTCAATGGAAAGCCTAGTTCTAGAAACACTTACAAGTTTGCTTATGTGAGACAGGAGGATCTATTCTTCTCACAGCTTACTGTGAGGGAAACATTGTCTCTTGCTATAGAATTACAGCTTCCCCACATATCTTCTGTTGAAGAGAGGGATGAATATGTCAACAATCTCCTTTTCAAAATAGGCTTGGTCAGCTGTGCTGATACTAATGTTGGTGATGCAAAAGTTCGCGGAATCAGTGGCGGCGAAAAGAAACGTTTATCCTTGGCATGTGAACTGCTTGCGAGCCCATCTGTTATATTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAGCCAAGAGGTTCAGCGTACACCAATTTCGATGACATTATCTTGCTAACTGGTGGTTCCCTTGTTTATGCTGGTCCTGCTGGTGATGAACCATTGGCATACTTCTCAAAATTCGGGTACCACTGCCCTGATCATGTTAATCCTGCAGAATTTTTGGCCGATCTATTATCCATAGACTACAGTTCTTCTGATAGTGTCTATTCCTCTCAAAAAAGGATCAATGGGCTTGTTGAGTCATTCTCACAAGGACTGTCTACAATAACATATGCTACTCCGATTACTCTAGATGACCTCTCAAAAAGTAGGAAGAGAATCAGCAAGAGAACTGTAGCAAAAAGAAAAGGGGGGTGGTGGAAGCAATTCTGGTTGCTTCTTAGACGAGCATGGATGCAGGTCTTCCTTTTTCATTTCATTGTCTTTCTACTTATTGGAATGGCTGAACTTGGGTATATTGCATGA 1239 0.4471 MVVFGGKKVHQIVTGIGSNGLGQVVVAVAFSFLVRIFSAPGPALLPENDDDIDDDVPNNDSPDGETPTPTGKVTPVTIRWNNINCSISDKSSNSVRFLLKNLSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGLLEFNGKPSSRNTYKFAYVRQEDLFFSQLTVRETLSLAIELQLPHISSVEERDEYVNNLLFKIGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKPRGSAYTNFDDIILLTGGSLVYAGPAGDEPLAYFSKFGYHCPDHVNPAEFLADLLSIDYSSSDSVYSSQKRINGLVESFSQGLSTITYATPITLDDLSKSRKRISKRTVAKRKGGWWKQFWLLLRRAWMQVFLFHFIVFLLIGMAELGYIA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05859 412 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 78 328 IPR003439 GO:0005524
Trre1g05859 412 SMART AAA_5 108 375 IPR003593 GO:0016887
Trre1g05859 412 Pfam ABC transporter 99 251 IPR003439 GO:0005524
Trre1g05859 412 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 261 401 - -
Trre1g05859 412 Gene3D - 72 291 IPR027417 -
Trre1g05859 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 288 IPR027417 -
Trre1g05859 412 MobiDBLite consensus disorder prediction 45 74 - -
Trre1g05859 412 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524|GO:0016887
Trre1g05859 412 Pfam ABC-2 type transporter 265 326 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05859 Trre-Chr1 63272320 63275914 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05859 98 270 Calmodulin-binding Proteins AT2G36910 29.944 3.45e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05859 K05681 - gmx:100788256 607.831