Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05856 ATGATGAAGATTTCCCAAAACGACGAGTCTTCTAGAGTTGTTGGCGTTGATTCATATGCATTGGAGTATCTTTTTACCGTAAAAGTTGCATTAATGAAACATAACAGTACTAAAAAGTATCGTGAGTTTTTCAATCTCCTAAAAGATTATTTAGAGCTTAGAAGAAGAAGAAGAAGTAGTCCTTGTTATGATGATTTATTAAACAATGTCAAAGCAAGAGTGAAAGAGGTGCTTAAAGGACATAGAGATTTAATTTTGGGATTCAACCCCTTGCTGCCAAAGGAACATCAAATCACGCTTCCTTTTCAACTCGAGACCTCCGGTAAAAAGGAGGAATATCCTCCCACTGATTCAAGGCATCATTTGGAGGATCCATCATAA 381 0.3648 MMKISQNDESSRVVGVDSYALEYLFTVKVALMKHNSTKKYREFFNLLKDYLELRRRRRSSPCYDDLLNNVKARVKEVLKGHRDLILGFNPLLPKEHQITLPFQLETSGKKEEYPPTDSRHHLEDPS 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05856 126 ProSiteProfiles PAH domain profile. 12 95 IPR003822 GO:0006355
Trre1g05856 126 PANTHER SIN3B-RELATED 19 101 IPR039774 GO:0003714
Trre1g05856 126 Pfam Paired amphipathic helix repeat 39 89 IPR003822 GO:0006355
Trre1g05856 126 Gene3D Paired amphipathic helix 17 96 IPR036600 GO:0006355
Trre1g05856 126 MobiDBLite consensus disorder prediction 110 126 - -
Trre1g05856 126 SUPERFAMILY PAH2 domain 20 95 IPR036600 GO:0006355
Trre1g05856 126 MobiDBLite consensus disorder prediction 103 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05856 Trre-Chr1 63255079 63258658 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05856 8 100 WRKY Transcription Factor Family AT4G12020 36.458 2.53e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g05856 PAH 3.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05856 K11644 - cam:101488742 69.3218