Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05849 ATGGATCCAGTGCCTGGTGATGCGTCGAATCCACCTCCTCTGAAAATACCATCTACGACAACTCCTGCTAAAGAGGATGATGGTCAAGATTCTGCTGCTGTAGCCTCTGGACAAGATAATACTTCCCATGAAGCACCATCTAGGCTTTCTCCTACCGGCATATCTTCTTGGGCAAAAAATTTAAAAATTTCTCAGTCATTTTCTGGTAACCAAGACGACTCTTCAAGTGAAAATGTTGGGAAATCAACGTTTGCACGCTTTACAAGTAATCTGGGATTGCGGATGTCTCCAAAAGCTCCTGTGGTAGATGACAATTCCAATGAACCGGCAGCACAATCTAATTTGTTTGGAAGTATCACAAAAGGTCTGGTAGACACTTCGAAGAATGCGGTGAAAGCTGTGCAGGTCAAAGCGCGGCACGTTGTTTCTCAAAACAAACGCAGATACCAGGAGGGAGGTTTTGATTTGGATATGACATATATCACGGAAAACATTATTGCCATGGGGTTCCCTGCTGGTGACATGAGCTCTGGTTTTTTTGGTTATGTTGAAGGATTTTACAGAAATCACATGGAAGAAGTGATCAAGTTTTTTGAGACTCACCACAAGGATAAATACAAAGTATATAATCTTTGTTTGGAGCGCCTGTATGATGCATCATTGTTCGAGGGGAAGGTTGCTAGCTTCCCATTTGATGACCATAATTGCCCACCGCTTCAACTGGTTATATCATTTTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTGGTAGTTGTCCACTGTAAGGCTGGGATGGCCAGGACAGGGTTGATGATTTCTAGTCTTCTACTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCAATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAGTATTTTGAACGGGTCTTGACTTACTTTAATGGTGAATGCCCACCTCCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGTCCTTATTGGATCAGGCCATCTATAACCATCTCAGATCATAGTGGTGTGTTGTTCTCAACGAAAAAGCATCCAAGAACAAAAGATCTTTTGCCAGAAGATTTTTGGTTTACTGCACCGAAAAAGGGAGTGATGGTCTTTGCTTTGCCTGGAGAGCCTGGTCTCACAGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGCTGAACACAACCATGATAGAAAACAGGAAAATTTTGAACACCGGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCATCTCCAGGATTCCAGGTTGAGGTTGTGCTGGTGGATCATAATGGCAATGTTGTGGCTTCAAAACCTGAAATTATAAAGAAATCAGATGAGAGTTCAAGTACCAATCCTGTCCCAGTTGAGGCGAGCAACCCCGCACCAAATGCAGACAAAGAGTCAGGGGATGGAGATCAGGACAAGGACGATGTATTTTCAGATGGTGAGGCAGATCATCCTGCTTCTTCAAGAAGCAAGCAAACAAAGGCACCTTCTGAAGCAGTTGAAACAGTTGCAAGTGCCACCAAAGAGTCTGAGGCAAACAAAATTTCAAATCAAATCACAAATATAACACATGCAACAGAACAAGTTTCTTTGGGTAGTAAGATCTCTACACCAAGTCAAAGTACTGGTGAGCCAAAAAGTGATGTTGGTGGAAGAACAGTGGTGTCCAGTCTCGACGGGCCTAGCTCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACGTTCGGAGATGATGAAGACTATGAAAGTGATTGA 1866 0.4293 MDPVPGDASNPPPLKIPSTTTPAKEDDGQDSAAVASGQDNTSHEAPSRLSPTGISSWAKNLKISQSFSGNQDDSSSENVGKSTFARFTSNLGLRMSPKAPVVDDNSNEPAAQSNLFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCLERLYDASLFEGKVASFPFDDHNCPPLQLVISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGECPPPRRCMLRGFRLHRCPYWIRPSITISDHSGVLFSTKKHPRTKDLLPEDFWFTAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMIENRKILNTGDLDGFDKRKLPSPGFQVEVVLVDHNGNVVASKPEIIKKSDESSSTNPVPVEASNPAPNADKESGDGDQDKDDVFSDGEADHPASSRSKQTKAPSEAVETVASATKESEANKISNQITNITHATEQVSLGSKISTPSQSTGEPKSDVGGRTVVSSLDGPSSESEFKAMAADASVFTFGDDEDYESD 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05849 621 MobiDBLite consensus disorder prediction 33 54 - -
Trre1g05849 621 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Trre1g05849 621 MobiDBLite consensus disorder prediction 1 54 - -
Trre1g05849 621 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Trre1g05849 621 MobiDBLite consensus disorder prediction 498 521 - -
Trre1g05849 621 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Trre1g05849 621 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Trre1g05849 621 SMART PTEN_C2_2 331 459 IPR014020 -
Trre1g05849 621 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Trre1g05849 621 MobiDBLite consensus disorder prediction 522 580 - -
Trre1g05849 621 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Trre1g05849 621 MobiDBLite consensus disorder prediction 468 596 - -
Trre1g05849 621 MobiDBLite consensus disorder prediction 1 18 - -
Trre1g05849 621 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 261 300 IPR000387 GO:0016311|GO:0016791
Trre1g05849 621 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Trre1g05849 621 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 569 - -
Trre1g05849 621 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 403 457 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05849 Trre-Chr1 63186390 63191571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05849 33 621 Protein tyrosine phosphatase (PTP) family AT3G19420 69.167 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05849 K01110 - gmx:100784003 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05849 1 63186390 63191571 Trre1g05849 1 63186390 63191571 ECH
Trre9g00798 9 6111642 6116877 Trre1g05849 1 63186390 63191571 PCT