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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Trre1g05848
ATGGCAATCCATCATCATCACAATCAACTCAATCAAAACGTTTCATCTCTTTTAGATGTTCTTTACTGTGATGAAGAAAAATGGGAAGAAGAACAAGAACAAGATGATTCATCATCTGAACAAAGTGATGTTACAACAAACAATGATATCTTTGACTCTACTTCCCTTTTTCCCCTTCTTTTGTTACAACAAGATTTGTTCTATGAAGATGAAGAACTTAACACTCTTTTCATCAAAGAAAAAACTCATTATGAAGATCTAAAAAACATGAAGATGAATTTTGATGATGATGACTCACTCTCTCAACCACGTCGTGAAGCTGTTGAATGGATGCTTAAAGTCAATGCTCATTATGGTTTCTCTTCTCTCACTGCAACACTTGCTGTTACTTACTTTGATAGATTCATTTTAAGTTTCCATTTTCAAAAAGATAAACCATGGATGCTTCAGCTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTGGACCTTCAAGTGCAAGATACTAAATATGTGTTTGAGGCAAAAACTATTCAGAGAATGGAGCTTTTGATTCTTTCAACACTGAAATGGAAGATGCATCCTGTTACACCACACTCATTTCTAGATCACATTATAAGAAGACTTGGATTGAAAACTAATCTTCATTGGGAGTTTCTAAGGCGTTGTGAAAATCTTCTTCTAGCTGTACTTTTAGATTCAAGATTCGTTGGTTGTGTTCCTTCTGTGTTGGCCACTGCTACAATGCTGCATGTTATAGATCAGATTGAACAGAGTGATGATGGTGTGGACTACAAAAATCAGCTTCTTAATGTTCTCAAAATCAGCAAGGAGAAAGTAGATGAATGTTATAATTTGATTATCCAAGTGACAAATGCAAATTCTAATGATGATTATTATTATTATGGTAATAATAAAAGAAAGTATGAACAAATCCCTGGTAGTCCAAGTGGTGTAATTGATGCAGTTTTTAGTTCTGATGGTTCCAACGATTCATGGACAGTGGGGTCATCAACATATTCAACAACATCAGAGCCTGTTTTTAAGAAGACCAAAACTCAAGGACAAAATGTGAATTTGTCACCTCTTAATAGGGTCATTGTTGGAATTCTATCCACTGCAACTTCTCCTTAA
1164
0.3488
MAIHHHHNQLNQNVSSLLDVLYCDEEKWEEEQEQDDSSSEQSDVTTNNDIFDSTSLFPLLLLQQDLFYEDEELNTLFIKEKTHYEDLKNMKMNFDDDDSLSQPRREAVEWMLKVNAHYGFSSLTATLAVTYFDRFILSFHFQKDKPWMLQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTPHSFLDHIIRRLGLKTNLHWEFLRRCENLLLAVLLDSRFVGCVPSVLATATMLHVIDQIEQSDDGVDYKNQLLNVLKISKEKVDECYNLIIQVTNANSNDDYYYYGNNKRKYEQIPGSPSGVIDAVFSSDGSNDSWTVGSSTYSTTSEPVFKKTKTQGQNVNLSPLNRVIVGILSTATSP
387
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Trre1g05848
387
ProSitePatterns
Cyclins signature.
104
135
IPR006671
-
Trre1g05848
387
Gene3D
-
205
295
-
-
Trre1g05848
387
CDD
CYCLIN_AtCycD-like_rpt2
206
297
-
-
Trre1g05848
387
SUPERFAMILY
Cyclin-like
64
204
IPR036915
-
Trre1g05848
387
SMART
Cyclin_C_2
206
328
IPR004367
-
Trre1g05848
387
CDD
CYCLIN_AtCycD-like_rpt1
104
201
-
-
Trre1g05848
387
Pfam
Cyclin, N-terminal domain
89
203
IPR006671
-
Trre1g05848
387
Gene3D
-
96
204
-
-
Trre1g05848
387
Pfam
Cyclin, C-terminal domain
206
319
IPR004367
-
Trre1g05848
387
SMART
cyclin_7
109
197
IPR013763
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Trre1g05848
Trre-Chr1
63153967
63155805
Dispersed/Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Trre1g05848
1
318
Core Cell Cycle Gene Families
AT4G34160
54.859
1.13e-112
332
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Trre1g05848
K14505
-
gmx:547740
512.301
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Trre1g05848
1
63153967
63155805
Trre1g05848
1
63153967
63155805
ECH
Trre5g04863
5
50480531
50482050
Trre1g05848
1
63153967
63155805
ECH
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