Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05848 ATGGCAATCCATCATCATCACAATCAACTCAATCAAAACGTTTCATCTCTTTTAGATGTTCTTTACTGTGATGAAGAAAAATGGGAAGAAGAACAAGAACAAGATGATTCATCATCTGAACAAAGTGATGTTACAACAAACAATGATATCTTTGACTCTACTTCCCTTTTTCCCCTTCTTTTGTTACAACAAGATTTGTTCTATGAAGATGAAGAACTTAACACTCTTTTCATCAAAGAAAAAACTCATTATGAAGATCTAAAAAACATGAAGATGAATTTTGATGATGATGACTCACTCTCTCAACCACGTCGTGAAGCTGTTGAATGGATGCTTAAAGTCAATGCTCATTATGGTTTCTCTTCTCTCACTGCAACACTTGCTGTTACTTACTTTGATAGATTCATTTTAAGTTTCCATTTTCAAAAAGATAAACCATGGATGCTTCAGCTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTTCCTCTTCTCTTGGACCTTCAAGTGCAAGATACTAAATATGTGTTTGAGGCAAAAACTATTCAGAGAATGGAGCTTTTGATTCTTTCAACACTGAAATGGAAGATGCATCCTGTTACACCACACTCATTTCTAGATCACATTATAAGAAGACTTGGATTGAAAACTAATCTTCATTGGGAGTTTCTAAGGCGTTGTGAAAATCTTCTTCTAGCTGTACTTTTAGATTCAAGATTCGTTGGTTGTGTTCCTTCTGTGTTGGCCACTGCTACAATGCTGCATGTTATAGATCAGATTGAACAGAGTGATGATGGTGTGGACTACAAAAATCAGCTTCTTAATGTTCTCAAAATCAGCAAGGAGAAAGTAGATGAATGTTATAATTTGATTATCCAAGTGACAAATGCAAATTCTAATGATGATTATTATTATTATGGTAATAATAAAAGAAAGTATGAACAAATCCCTGGTAGTCCAAGTGGTGTAATTGATGCAGTTTTTAGTTCTGATGGTTCCAACGATTCATGGACAGTGGGGTCATCAACATATTCAACAACATCAGAGCCTGTTTTTAAGAAGACCAAAACTCAAGGACAAAATGTGAATTTGTCACCTCTTAATAGGGTCATTGTTGGAATTCTATCCACTGCAACTTCTCCTTAA 1164 0.3488 MAIHHHHNQLNQNVSSLLDVLYCDEEKWEEEQEQDDSSSEQSDVTTNNDIFDSTSLFPLLLLQQDLFYEDEELNTLFIKEKTHYEDLKNMKMNFDDDDSLSQPRREAVEWMLKVNAHYGFSSLTATLAVTYFDRFILSFHFQKDKPWMLQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTPHSFLDHIIRRLGLKTNLHWEFLRRCENLLLAVLLDSRFVGCVPSVLATATMLHVIDQIEQSDDGVDYKNQLLNVLKISKEKVDECYNLIIQVTNANSNDDYYYYGNNKRKYEQIPGSPSGVIDAVFSSDGSNDSWTVGSSTYSTTSEPVFKKTKTQGQNVNLSPLNRVIVGILSTATSP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05848 387 ProSitePatterns Cyclins signature. 104 135 IPR006671 -
Trre1g05848 387 Gene3D - 205 295 - -
Trre1g05848 387 CDD CYCLIN_AtCycD-like_rpt2 206 297 - -
Trre1g05848 387 SUPERFAMILY Cyclin-like 64 204 IPR036915 -
Trre1g05848 387 SMART Cyclin_C_2 206 328 IPR004367 -
Trre1g05848 387 CDD CYCLIN_AtCycD-like_rpt1 104 201 - -
Trre1g05848 387 Pfam Cyclin, N-terminal domain 89 203 IPR006671 -
Trre1g05848 387 Gene3D - 96 204 - -
Trre1g05848 387 Pfam Cyclin, C-terminal domain 206 319 IPR004367 -
Trre1g05848 387 SMART cyclin_7 109 197 IPR013763 -
Trre1g05848 387 FunFam CYCLIN D32 205 295 - -
Trre1g05848 387 FunFam D3-type cyclin 97 204 - -
Trre1g05848 387 PANTHER CYCLINS 43 299 IPR039361 -
Trre1g05848 387 MobiDBLite consensus disorder prediction 28 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05848 Trre-Chr1 63153967 63155805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05848 1 318 Core Cell Cycle Gene Families AT4G34160 54.859 1.13e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05848 K14505 - gmx:547740 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05848 1 63153967 63155805 Trre1g05848 1 63153967 63155805 ECH
Trre5g04863 5 50480531 50482050 Trre1g05848 1 63153967 63155805 ECH