Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05842 ATGGCTACGTTTTCAATCGGAACACACTTGTCTATGTTCCAACATTCACGGAATTCTAAACTTTCTTCTCATCCTCTTCACACAATTCAATCTTCGCCATCACAATCACAACCCTTCTTGGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTAGAAACAGATTCGGAGTTCCCAATTCCAAGTTACTCCGTAATAATGTATTGGCACGTGCTGAAGATAAAGCTAGAGATTCAAACTCTTCTTTTCAGCCTCCACAAAGTTCCCAACAACAGTTCCAGGAATTGACATCAGAATCTGGAACTTGTGATCCTCTATGTTCAGTTGATGAAACAAGCTCACAAGATTTTGAAGATAACTATCAGCCCAAGACTGATTTGCTCAAAGCCGTTGCGGTATTTGCTGCGGCTGCAACTGGGACAGTTGCAATTAACCATTCCTGGGTCGCGGCAAATCAGGATCTTGCTATGGCATTGCTATTTGTAATAGGATATGCAGGCATCATATTTGAAGAATCTCTAGCGTTCAACAAAAGTGGGGTAGGACTATTGATGGCTGTAAGCTTATGGGTGATACGGAGTATTGGGGCCCCATCAACTGATATAGCTGTCTCAGAGCTATCTCATGCATCTGCCGAAGTCAGTGAAATAGTGTTCTTCTTGCTTGGTGCAATGACCATTGTTGAGATAGTTGATGCTCATCAAGGATTTAAGATAGTTACGGACAATATAAAAACCCGAAACCCACGCCTTCTCCTTTGGGTGGTTGGATTTATTACATTTTTTCTCAGTGCAGTTCTGGACAACCTTACATCCACCATAGTCATGGTTTCTCTGTTGCGGAAATTAGTACCTCCATCGGAGTATCGAAAGATTCTTGGAGCTGTTGTTGTAATAGCAGCAAACGCTGGTGGTGCTTGGACTCCTATTGGTGATGTCACAACTACTATGCTGTGGATACATGGCCAAATAACTACAGTGGAAACAATGAAGGGTTTGTTTTTGCCTTCAGCCATTTCTCTAGCTGTTCCACTGGCTCTAATGTCCTTGACTAGTGAAGTTAATGGCAAGGGGCAGGATTCTCCCGATGTCTTGTCATCTGAACAGATGGCTCCACGGGGACAGCTTGTTTTCTCGGTAGGTTTAGGAGCTTTGATTTTTGTCCCCGTGTTCAAGGCCGTCACAGGTTTGCCTCCGTACATGGGGATGTTGCTTGGACTTGGCGTGCTTTGGATCCTTACTGATGCGATCCATTATGGTGAATCTGAAAAGAGAAAGAAGCTTAAAGTGCCACAGGCACTATCAAGGATAGATACTCAAGGAGCACTATTCTTCCTTGGAATTCTATTATCTGTTAGCAGCCTGGAAGCGGCAGGTATTCTTCGGGAAATAGCAAATTACCTCGATGCTCATGTCCAAAATAGTGAACTAATTGCAAGTGCTATTGGAGTCATATCTGCGATAATAGACAATGTTCCATTGGTTGCTGCAACGATGGGAATGTACGACGTCACTTCTTTCCCCCAAGATTCTGAGTTCTGGCAATTGGTTGCATTTTGTGCCGGTACCGGTGGATCCATGTTAGTTATTGGCTCAGCTGCTGGAGTTGCATTCATGGGGATGGAAAAAGTGGACTTCTTTTGGTACTTTAAAAAGGTTAGTGGCTTTGCTTTTGCAGGTTATGCTGCTGGTATTGCCGCATACTTAGCCGTTCATAACCTCAACATCTCCCTACCAACAACTCTAGCCGAGGTTCCTTTTCTTTCTGGTTCTTAA 1773 0.4343 MATFSIGTHLSMFQHSRNSKLSSHPLHTIQSSPSQSQPFLVSSSSSSSSSCRNRFGVPNSKLLRNNVLARAEDKARDSNSSFQPPQSSQQQFQELTSESGTCDPLCSVDETSSQDFEDNYQPKTDLLKAVAVFAAAATGTVAINHSWVAANQDLAMALLFVIGYAGIIFEESLAFNKSGVGLLMAVSLWVIRSIGAPSTDIAVSELSHASAEVSEIVFFLLGAMTIVEIVDAHQGFKIVTDNIKTRNPRLLLWVVGFITFFLSAVLDNLTSTIVMVSLLRKLVPPSEYRKILGAVVVIAANAGGAWTPIGDVTTTMLWIHGQITTVETMKGLFLPSAISLAVPLALMSLTSEVNGKGQDSPDVLSSEQMAPRGQLVFSVGLGALIFVPVFKAVTGLPPYMGMLLGLGVLWILTDAIHYGESEKRKKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGILREIANYLDAHVQNSELIASAIGVISAIIDNVPLVAATMGMYDVTSFPQDSEFWQLVAFCAGTGGSMLVIGSAAGVAFMGMEKVDFFWYFKKVSGFAFAGYAAGIAAYLAVHNLNISLPTTLAEVPFLSGS 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05842 590 MobiDBLite consensus disorder prediction 73 94 - -
Trre1g05842 590 MobiDBLite consensus disorder prediction 16 57 - -
Trre1g05842 590 MobiDBLite consensus disorder prediction 78 94 - -
Trre1g05842 590 NCBIfam sodium:proton antiporter NhaD 181 545 - -
Trre1g05842 590 Pfam Citrate transporter 165 521 IPR004680 GO:0016020|GO:0055085
Trre1g05842 590 PANTHER SODIUM/PROTON ANTIPORTER 1-RELATED 64 590 IPR045016 GO:0006814|GO:0015297
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05842 Trre-Chr1 63105397 63110790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05842 1 590 Antiporters AT3G19490 76.650 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05842 - - gmx:100779521 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05842 1 63105397 63110790 Trre1g05842 1 63105397 63110790 ECH