Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05839 ATGATGAACCTTAACACCCTCTTGAAAGTTTCATCTTTTCTTCTTCTACTGTTACTTCAATATTCATCTGCTCTTAACTCTGATGGAATTTTCTTGCTTAAATTCAGATACTCAATCCTTAGTGACCCTTTATCAGTCTTTGATAACTGGAACTATGATGATGCAACTCCATGTTCATGGCATGGAGTTGCATGCAGTGAAGTAGGAACTCCTAATACACCTGATTCCTTCAGAGTAACTAGCTTAATCCTTCCAAATAGTCAACTTCTTGGTTCCATAGCAGAAGATTTAGGCTTAATCCAAAACCTTAATCACATTGATCTCTCAAACAATTTCCTCAATGGTTCATTACCAAACTCTATATTCAACTCTTCTCAGCTACAATTCCTTTCACTCTCCAACAATGTAATCTCAGGTAAACTACCTGAGTTGATTGGTTTATCAACAAACCTTCAAACTCTCAACCTTTCTGATAATGCCTTTGGTGGTTCCATCCCAAAAAACCTCACTACTCTACAGAATCTAACAGTTGTTTCTTTAAAAAGTAACTATTTTTCTGGTCAAATTCCAAATGGGTTCAACTCAGTTCAGATTCTAGATCTGTCATCAAATTTACTCAATGAATCTCTTCCAAATAACTTCCAAGGCCAAAATCTTCAGTACTTCAATCTCTCTTATAATAAACTCTCAGGGGCAATTCCACAAACATTTGCTAGGCACATTCCTGAAAACTCAACAATTGATCTCTCCTTCAACAATCTAACAGGACCAATACCTGAATCCATGGCTTTACTCAATCAGAAAACAGAATCATTCTCTGGAAATTCTGATCTATGTGGAAAACCACTGAAAAATCTTTGTACTATTCCCTCTAGTATCTCAACTCCACCAAATATCACAAACACATCTTCACCAGCAATTGCAGCTATACCAAGAACAATTGATTCAACACCAGGAACAAACACAACATCGACAGAAACAACTAGTGATTCTTCTCAGAATGGTTTAAAACCTACTACAATAGCAGCCATTGTTGTAGGTGATATACTTGGCATGGCAATTTTGGCTCTTATCATTCTTTTTGTATATCAACAAAGAAAGAAAAGATATCCAAATCCAAAATCAAACACTGTACTTCAAAACAAAAAAGTATCAGAATCTGTAGCAAAACAAGATCAAGAATCTCTAAAACCACATTCACTTCCATGTTCTTCATGTTGTTTAACAATTAAACAAGAAGAAACATCAGAAGAAGATCCAAGTTCCGATGAAAGCGACCGCGACACTAACAACATTATTACAGTTGATAATCCGAAAGAAGGCACGCTTGTGACGGTCGATGGCGAGACTAAGATGGATTTGGAGACATTGTTGAAGGCTTCAGCTTATATACTTGGAACAAGTAAAGTGAGTATTGTTTATAAAGCAGTTTTACAAGATGGAAGAGTTTTTGCTGTTAGAAGAATTGGTGAGTGTTGTGTTGAAAGAATGAAGGAATTTGAGAATCATGTGAGAGGTATTGCAAAGATTAAGCATCCTAATTTGGTTAAGATTCGTGGATTCTGTTGGGGTGAAGATGAAAAGCTTGTGATTTCTGATTATGTTCCTAATGGCAGTCTCTCCACTATTGGTTACAGAAGAGGAAGTACTTCTCCAATGAACTTATCCTTGGAGTTGCGGTTGAAGATAGCAAAAGGGGTAGCAAGAGGACTAGCATTCATTCATGAGAAGAAACATGTGCACGGCAATGTTAAACCAAGCAATATCTTACTAAATTCAGAAATGGAACCTATCATAAGTGATTTTGGACTTGATTTACTTCTCTTGAATGATATCAACCACAAAGGAAACGGTTCAGCTAGACAATTAGTGAACCAAAGAACCCAACAACAAAACCAAGAGCTATTCATTGGTTCAACAACTTCTAGTCCATATGCTACAATGGGGTCATCATCATCTACTAATGGTAGTGGTCAAGTGCAATATCAAGCACCAGAATCTTTTCAAAACATAAAACCAAACCACAAATGGGATGTTTATTCATTTGGAGTTGTTTTGTTAGAGCTTTTAAGTGGAAGGGTTTTCTCGGACCGGGAATTGGACCAGTGGTCCATTTCCGGTTCGGTTGAAGAGGAGAAAACCCGGGTTTTGAGAATGGTTGATGTGGCAATTAAGCATGAGATTGAAGGTAGAGAAAATGTGGTGTTTACTTGTTTTAAGTTGGGGTTGAATTGTGTTTCTCTTGTCCCACAAAAGAGACCGTCTATGAAAGAAGCACTACAAATTTTAGAGAAGATCCCCACCGTTGGTATTAATTAA 2319 0.3696 MMNLNTLLKVSSFLLLLLLQYSSALNSDGIFLLKFRYSILSDPLSVFDNWNYDDATPCSWHGVACSEVGTPNTPDSFRVTSLILPNSQLLGSIAEDLGLIQNLNHIDLSNNFLNGSLPNSIFNSSQLQFLSLSNNVISGKLPELIGLSTNLQTLNLSDNAFGGSIPKNLTTLQNLTVVSLKSNYFSGQIPNGFNSVQILDLSSNLLNESLPNNFQGQNLQYFNLSYNKLSGAIPQTFARHIPENSTIDLSFNNLTGPIPESMALLNQKTESFSGNSDLCGKPLKNLCTIPSSISTPPNITNTSSPAIAAIPRTIDSTPGTNTTSTETTSDSSQNGLKPTTIAAIVVGDILGMAILALIILFVYQQRKKRYPNPKSNTVLQNKKVSESVAKQDQESLKPHSLPCSSCCLTIKQEETSEEDPSSDESDRDTNNIITVDNPKEGTLVTVDGETKMDLETLLKASAYILGTSKVSIVYKAVLQDGRVFAVRRIGECCVERMKEFENHVRGIAKIKHPNLVKIRGFCWGEDEKLVISDYVPNGSLSTIGYRRGSTSPMNLSLELRLKIAKGVARGLAFIHEKKHVHGNVKPSNILLNSEMEPIISDFGLDLLLLNDINHKGNGSARQLVNQRTQQQNQELFIGSTTSSPYATMGSSSSTNGSGQVQYQAPESFQNIKPNHKWDVYSFGVVLLELLSGRVFSDRELDQWSISGSVEEEKTRVLRMVDVAIKHEIEGRENVVFTCFKLGLNCVSLVPQKRPSMKEALQILEKIPTVGIN 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05839 772 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Trre1g05839 772 PANTHER OS05G0588300 PROTEIN 175 767 - -
Trre1g05839 772 Pfam Protein kinase domain 464 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05839 772 FunFam Leucine-rich repeat receptor-like protein kinase 25 191 - -
Trre1g05839 772 MobiDBLite consensus disorder prediction 414 434 - -
Trre1g05839 772 CDD TM_EGFR-like 339 369 - -
Trre1g05839 772 Gene3D Transferase(Phosphotransferase) domain 1 535 769 - -
Trre1g05839 772 FunFam Leucine-rich repeat receptor-like protein kinase 195 289 - -
Trre1g05839 772 ProSiteProfiles Leucine-rich repeat profile. 126 148 IPR001611 GO:0005515
Trre1g05839 772 MobiDBLite consensus disorder prediction 312 335 - -
Trre1g05839 772 Gene3D Ribonuclease Inhibitor 25 194 IPR032675 -
Trre1g05839 772 Gene3D Ribonuclease Inhibitor 195 289 IPR032675 -
Trre1g05839 772 SUPERFAMILY Protein kinase-like (PK-like) 464 766 IPR011009 -
Trre1g05839 772 Gene3D Phosphorylase Kinase; domain 1 434 534 - -
Trre1g05839 772 ProSiteProfiles Protein kinase domain profile. 459 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05839 772 SUPERFAMILY L domain-like 29 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05839 Trre-Chr1 63087823 63090698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05839 24 766 Receptor kinase-like Gene Family AT2G15300 50.653 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre1g05839 Pkinase 2.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05839 - - gmx:100820334 986.097