Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05833 ATGGGTAGCCTTGAAGTTGCTGAAAGAACAACAGTAGGATTGGCTGCAAAAGATCCTTCTGGAATTCTCACTCCGTACAAATACACCCTCAGAAACACAGGACCGGATGATGTTTACATCAAAATTCATTACTGTGGTGTTTGTCATTCTGATCTTCACCAGATCAAAAATGATCTTGGCATGTCCAATTATCCCATGGTTCCTGGGCATGAAGTGGTTGGAGAGGTTTTAGAGGTGGGTTCAAATGTTAGCAAGTTCAGTGTGGGAGAAATTGTGGGAGTTGGACTTCTGGTTGGTTGTTGCAAAAGCTGTAGGGCTTGTGATTCTGAGATTGAACAATACTGTAACAAGAAGATCTGGTCTTACAATGATGTTTATGCCGACGGAAAAGTCACTCAGGGTGGATTTGCTGAAGCTACTGTCGTTGAACAGAAGTTTGTTGTGAAAATACCAGAGGGATTGGCACCAGAGCAAGCTGCACCATTGTTATGTGCAGGTGTGACAGTGTACAGTCCACTTGCACATTTTGGGCTGAAACAGAGTGGGCTTAGAGGTGGAATTTTGGGCCTTGGTGGTGTAGGACACATGGGGGTGAAAGTAGCAAAAGCATTAGGTCATCATGTCACTGTGATAAGTTCTTCTGATAAGAAGAAGAAAGAAGCACTTGAGGATCTTGGAGCTGACAATTATCTTGTTAGCTCTGATACTGTTGGGATGCAAGAAGCTGCTGATTCACTTGATTATATCATTGATACTGTTCCTGTTGGTCACCCTCTTGAGCCTTATCTTGCATTGCTCAAAGTTGATGGAAAATTGATCTTGATGGGTGTTATTAACACCCCTCTTCAATTTGTTACCCCTATGGTCATGCTTGGGAGGAAGACAATTACTGGAAGCTTTGTTGGGAGTGTGAAGGAGACAGAGGAGATGTTGGAGTTTTGGAAAGAGAAGGGTCTAACCTCCATGATTGAAATTGTGACTATGGATTACATTAACAAAGCTTTTGAAAGATTGGAGAAGAATGATGTGAGGTATAGGTTTGTTGTGGATGTCAAAGGAAGTAAAATTGAGGAGTGA 1077 0.4225 MGSLEVAERTTVGLAAKDPSGILTPYKYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVSKFSVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYADGKVTQGGFAEATVVEQKFVVKIPEGLAPEQAAPLLCAGVTVYSPLAHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLALLKVDGKLILMGVINTPLQFVTPMVMLGRKTITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKIEE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05833 358 FunFam probable cinnamyl alcohol dehydrogenase 14 171 - -
Trre1g05833 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 319 IPR036291 -
Trre1g05833 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Trre1g05833 358 PANTHER ALDEHYDE REDUCTASE 10 353 IPR047109 GO:0016616
Trre1g05833 358 FunFam Cinnamyl alcohol dehydrogenase 165 321 - -
Trre1g05833 358 FunFam Putative cinnamyl alcohol dehydrogenase 6 322 351 - -
Trre1g05833 358 Pfam Zinc-binding dehydrogenase 192 313 IPR013149 -
Trre1g05833 358 Pfam Alcohol dehydrogenase GroES-like domain 35 150 IPR013154 -
Trre1g05833 358 SMART PKS_ER_names_mod 21 349 IPR020843 GO:0016491
Trre1g05833 358 CDD CAD1 12 350 IPR047109 GO:0016616
Trre1g05833 358 SUPERFAMILY GroES-like 18 182 IPR011032 -
Trre1g05833 358 Gene3D - 15 351 - -
Trre1g05833 358 Gene3D - 165 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05833 Trre-Chr1 63043610 63045910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05833 1 358 Monolignol Biosynthesis Gene Families AT3G19450 77.095 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05833 K00083 - gmx:100777558 612.068