Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05823 ATGGTTGACCTATCTCATAAAGGCAACAAAGTTGATCTCAATGCTCTCAAGTCTGCCGCGTGTCGTAAGTATGGTCTCTCACGTGCGCCCAAACTTGTTGAGATGATTGCTGCTCTACCTGACTCCGAACGAGAGGTTCTTCTTCCCAAACTCCGAGCCAAACCTATCCGAACTGCATCTGGAATAGCTGTCGTTGCTGTCATGTCAAAGCCTCATCGTTGCCCCCACATTGCCACAACCGGTAACATTTGTGTGTACTGCCCCGGTGGTCCTGACTCCGATTTTGAATACAGTACTCAGTCTTACACTGGTTATGAACCTACCAGTATGCGTGCAATTCGAGCAAGGTATAACCCTTATGTGCAGACAAGAAGTAGGATAGATCAGCTTAAGCGTTTAGGTCACAGTGTAGACAAGGTTGAGTTTATATTAATGGGTGGAACTTTCATGTCGCTTCCGGCGGATTACCGTGATTACTTTATAAGGAATCTTCATGATGCGTTGTCTGGACACACATCTGCCAATGTAGAAGAGGCGGTGACATACTCTGAGCATAGTGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTCGGGCCTCACTTGCGACAAATGCTTTCTTATGGCTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCTCGTGACACTAATAGAGGACACACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCCGGTTTCAAGGTAGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGACATGGAAAGTTTCCGAGAATTTTTTGAAAGTCCTTTGTTTAGAGCAGATGGACTTAAAATATACCCCACTCTTGTTATACGTGGAACTGGACTTTATGAGCTTTGGAAAACTGGCAGGTATAGAAATTATCCACCTGAGCAACTTGTCGACATCATAGCAAGGATCCTTTCAATGGTACCTCCGTGGACACGTGTTTATAGAGTTCAGCGGGATATTCCGATGCCTTTGGTTACTTCTGGGGTTGAGAAAGGGAATCTACGGGAGCTAGCATTAGCTCGAATGGAAGACTTGGGATTAAAATGTCGTGATGTCCGGACCAGAGAAGCTGGAATCCAGGATATTCATCACCAAATTAAGCCAGAAGAGGTAGAGCTTGTTCGTCGTGATTATATGGCAAATGAAGGTTGGGAAACATTTCTGTCATATGAAGATACACGGCAGGATATCCTCGTTGGTTTGTTGCGACTGAGAAAATGTGGCCGAAACACTACTTGTCCAGAGCTTATGGGCAAGTGTTCTATAATTCGCGAGCTCCATGTTTATGGAACTGCTGTACCAGTTCATGGGAGGGACTCTGACAAGCTACAACACCAGGGTTATGGTACGCTTCTTATGGAGGAGGCTGAGCGGATTGCTCGGAAAGAACACAGATCAACTAAGATAGCTGTAATTTCTGGGGTTGGCACACGCCATTACTACAGAAAATTGGGATATGAGCTTGAAGGGCCTTACATGGTGAAATATCTAATGTAA 1569 0.4512 MVDLSHKGNKVDLNALKSAACRKYGLSRAPKLVEMIAALPDSEREVLLPKLRAKPIRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQTRSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIIRELHVYGTAVPVHGRDSDKLQHQGYGTLLMEEAERIARKEHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLM 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05823 522 Pfam Radical SAM superfamily 82 270 IPR007197 GO:0003824|GO:0051536
Trre1g05823 522 Pfam Radical_SAM C-terminal domain 288 367 IPR032432 -
Trre1g05823 522 Gene3D - 373 522 - -
Trre1g05823 522 SFLD elongater protein-like 11 521 - -
Trre1g05823 522 SFLD ELP3-like 11 521 IPR034687 -
Trre1g05823 522 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 330 517 IPR016181 -
Trre1g05823 522 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 2 521 IPR039661 -
Trre1g05823 522 SMART MiaB 64 326 IPR006638 GO:0003824|GO:0051536
Trre1g05823 522 PIRSF HAT_Elp3 2 522 IPR034687 -
Trre1g05823 522 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 9 521 IPR034687 -
Trre1g05823 522 Pfam Acetyltransferase (GNAT) family 374 510 IPR000182 GO:0016747
Trre1g05823 522 ProSiteProfiles Radical SAM core domain profile. 57 347 IPR007197 GO:0003824|GO:0051536
Trre1g05823 522 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 371 522 IPR000182 GO:0016747
Trre1g05823 522 SUPERFAMILY Radical SAM enzymes 94 333 - -
Trre1g05823 522 CDD Radical_SAM 71 318 - -
Trre1g05823 522 FunFam Elongator complex protein 3 370 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05823 Trre-Chr1 62951205 62954731 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Trre1g05823 Radical_SAM 1.1e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05823 K07739 - gmx:100818764 1041.57