Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05813 ATGGAAACCAAAGTTGATGAACTTCAAGTAATGGAACATTTGACCACACCACCAACAACTGGGACCAGTTTCTCTCAGTTACTATTAGAAGATGATAATGATAATGATAATGAATTGGTTCTTGGTGATGGTGGTGTGGACCAAACCTTTTCAACCTCTTTTTTCTCTCTTCATAACACACCTAAAATGCTTTGTTTTGGAAACTATCAAAATGAAATGGAAATTGAAACCAACCTTATAATAACTCCTCAGAAATCTGTTATCACTTCAAGTGATTCTTCTTCTGCTTCTTCATGCAACCATGCTAACACTGGTTTCAATTCCTTAACAACAACAACAACTAAACCCAATGGTTTGCAGAAAAAGCGGAATGGGTCAGGAGGAGGAGCACAAGAACTTGGGACCAAAGCAGGTGTTGGAGGGCAGAGATGTCCTAAGAAGACCAAAGCAGAGAACAACCCCACTTCAACTGGACATGCAAAGAAAAAAGAGAAGCTTGGTGAAAGAATTGCAGCATTACAACAACTTGTTTCACCCTTTGGCAAGACTGATACAGCTTCAGTGCTTCACGAGGCTACTGGTTACATAAGATTCTTACATGATCAAGTTCAGGTCCTGTGCTCACCATACCTGCAACCTTCACAAATTCAATTTCAAAATCACCCTGGGGACGGAGATAACAATGGAGAAGAAGTGGAGAAAGATTTGAGGAGCAGAGGTTTATGTTTGATCCCTGTTGGATGCACCCTACACGTGGCAAGTACTAATGGTGCTGATTATTGGTCACCTGCAACAATAGGGAACAATGTTTCACCTTCAACTATTACTAAGCAGTAA 837 0.405 METKVDELQVMEHLTTPPTTGTSFSQLLLEDDNDNDNELVLGDGGVDQTFSTSFFSLHNTPKMLCFGNYQNEMEIETNLIITPQKSVITSSDSSSASSCNHANTGFNSLTTTTTKPNGLQKKRNGSGGGAQELGTKAGVGGQRCPKKTKAENNPTSTGHAKKKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIRFLHDQVQVLCSPYLQPSQIQFQNHPGDGDNNGEEVEKDLRSRGLCLIPVGCTLHVASTNGADYWSPATIGNNVSPSTITKQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05813 278 MobiDBLite consensus disorder prediction 91 165 - -
Trre1g05813 278 Gene3D - 160 217 IPR036638 GO:0046983
Trre1g05813 278 CDD bHLH_AtbHLH_like 161 206 IPR045239 -
Trre1g05813 278 MobiDBLite consensus disorder prediction 91 121 - -
Trre1g05813 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 217 IPR036638 GO:0046983
Trre1g05813 278 FunFam Transcription factor bHLH113 142 213 - -
Trre1g05813 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Trre1g05813 278 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05813 Trre-Chr1 62919934 62921817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05813 133 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 46.970 2.45e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05813 - - aprc:113873132 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05813 1 62919934 62921817 Trre1g05813 1 62919934 62921817 ECH