Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05812 ATGGAAACCAAAGTTGATGAACTTCAAGTAATGGAACATTTGACCACACCACCAACAACTGGGACCAGTTTCTCTCAGTTACTATTAGAAGATGATAATGATAATGATAATGAATTGGTTCTTGGTGATGGTGGTGTGGACCAAACCTTTTCAACCTCTTTTTTCTCTCTTCATAACACACCTAAAATGCTTTGTTTTGGAAACTATCAAAATGAAATGGAAATTGAAACCAACCTTATAATAACTCCTCAGAAATCTGTTATCACTTCAAGTGATTCTTCTTCTGCTTCTTCATGCAACCATGCTAACACTGGTTTCAATTCCTTAACAACAACAACAACTAAACCCAATGGTTTGCAGAAAAAGCGGAATGGGTCAGGAGGAGGAGCACAAGAACTTGGGACCAAAGCAGGTGTTGGAGGGCAGAGATGTCCTAAGAAGACCAAAGCAGAGAACAACCCCACTTCAACTGGACATGCAAAGCAGAAAAAAGAGAAGCTTGGTGAAAGAATTGCAGCATTACAACAACTTGTTTCACCCTTTGGCAAGACTGATACAGCTTCAGTGCTTCACGAGGCTACTGGTTACATAAGATTCTTACATGATCAAGTTCAGGTCCTGTGCTCACCATACCTGCAACCTTCACAAATTCAATTTCAAAATCACCCTGGGGACGGAGATAACAATGGAGAAGAAGTGGAGAAAGATTTGAGGAGCAGAGGTTTATGTTTGATCCCTGTTGGATGCACCCTACACGTGGCAAGTACTAATGGTGCTGATTATTGGTCACCTGCAACAATAGGGAACAATGTTTCACCTTCAACTATTACTAAGCAGTAA 840 0.406 METKVDELQVMEHLTTPPTTGTSFSQLLLEDDNDNDNELVLGDGGVDQTFSTSFFSLHNTPKMLCFGNYQNEMEIETNLIITPQKSVITSSDSSSASSCNHANTGFNSLTTTTTKPNGLQKKRNGSGGGAQELGTKAGVGGQRCPKKTKAENNPTSTGHAKQKKEKLGERIAALQQLVSPFGKTDTASVLHEATGYIRFLHDQVQVLCSPYLQPSQIQFQNHPGDGDNNGEEVEKDLRSRGLCLIPVGCTLHVASTNGADYWSPATIGNNVSPSTITKQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05812 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Trre1g05812 279 CDD bHLH_AtbHLH_like 160 207 IPR045239 -
Trre1g05812 279 Gene3D - 159 218 IPR036638 GO:0046983
Trre1g05812 279 MobiDBLite consensus disorder prediction 91 121 - -
Trre1g05812 279 FunFam Transcription factor bHLH113 142 214 - -
Trre1g05812 279 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 253 - -
Trre1g05812 279 MobiDBLite consensus disorder prediction 91 166 - -
Trre1g05812 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05812 Trre-Chr1 62919934 62921817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05812 160 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 54.717 6.07e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05812 - - gmx:100809317 293.123