Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05805 ATGATGATCAATGAAGATCAAACAAGTCTTACAACAATAGCTAAGGAACAACCAGGTGAAGTGATGGACAGAAATAAGAACAGCGATGATGGAAGCGGAGATGACAGTCCGAAAGAGTGGTTAAACCTGAGCTTAGGAGGCACTTCACTCTTAACAGCTGAAGAACCTGATTCACAATCAAGACCAACCAAAGTTTTTTCCTGCAATTTTTGCATGAGAAAGTTCTTTAGTTCACAAGCATTAGGAGGTCATCAGAACGCTCATAAAAGGGAAAGAGGCGCAGCAAGAAGATATCAATCTCAGACTCAAAGTCAGAGAACAATGGCATTAATGGGTTTGTCCATGAACAATATGCCAATGTTCCGATCACTTGGTGTCCAGCCCCATTCACTAGTGCACAAGCCATGCAGAGGTGGAACTATGATGGCACCGAGCTTTCAAGAAGCATATGCGGCAGGGATCGGAATGGCATGTACCCCTTTCACAACTGAGGAACATACTATTCCGGTGTGGCCAGGAAGTTTTCGTATGGTTCCACAACAGCCACAGCCACCACAAGAGATACTCAAGCTTGATTTAGACCTCAGACTCTGA 594 0.4428 MMINEDQTSLTTIAKEQPGEVMDRNKNSDDGSGDDSPKEWLNLSLGGTSLLTAEEPDSQSRPTKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQTQSQRTMALMGLSMNNMPMFRSLGVQPHSLVHKPCRGGTMMAPSFQEAYAAGIGMACTPFTTEEHTIPVWPGSFRMVPQQPQPPQEILKLDLDLRL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05805 197 MobiDBLite consensus disorder prediction 81 102 - -
Trre1g05805 197 Gene3D Classic Zinc Finger 49 117 - -
Trre1g05805 197 MobiDBLite consensus disorder prediction 1 42 - -
Trre1g05805 197 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Trre1g05805 197 PANTHER ZINC FINGER PROTEIN 4-LIKE 2 197 - -
Trre1g05805 197 MobiDBLite consensus disorder prediction 1 15 - -
Trre1g05805 197 MobiDBLite consensus disorder prediction 19 36 - -
Trre1g05805 197 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Trre1g05805 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05805 Trre-Chr1 62835965 62836558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05805 64 176 C2H2 Transcription Factor Family AT1G66140 36.620 1.62e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05805 - - gmx:100306296 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05805 1 62835965 62836558 Trre1g05805 1 62835965 62836558 ECH