Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05802 ATGAATATTTCAACTGGAAATTCGGCAAGCAATAAGGATTGTGCTACTGAGAAGATGGGAACTGAACAATGTGATTTGTCGAAAAAAACAGCTCAGATCGGCGATGAATGTTTAGACAACGAACAAAGAGTGCATGGTACTGTGTTAACCGATTCTGTTATCGATGAAAAGTCAAATGAAGTTTCTGTGAATGTGACTGACAATTCTGTTATTCAACTGCCTGAACTACCTTGTCCTTACTCAGAAAATACTTGTCAGACTTTAGAAAGTTCATGTCTTCAACAAAGTACCTCAGAAATCAAATGTCCTCAAAATGTTAAAAATGAAGCTGGAGAAACGAGGGATGCAGTACCTGCCCTTGTTGTGGTTGAAGAGCAAACACAATCTGTTCCTGCTCAAGTGAACTCTGATTCTGTGAACGAGCCATTGGATCCACCTTATGGAGATGTTACAGAAAATATTAAAAGCGGACCTGGTCAAATGAGTGATGCAGTAACTGGGTTTGTTGAAGACCATACCCAATCCGTTCCTGCTCAAGTGAACAGGGATTCTGTGAACGAGCTACTCGATATGCCTTCTGGAGATGTTACGGAAAATATTAGTTCTAAAAATGAACCTGGTGAAATGAGTGACGCAGTAACTGACCTTGTTGAAGACCAAACACAATCCGTTCCTGCTCAAGTGAACACATGTGCTGCGAAGAATGAGCTACTCGGTACACCTTCTGGAGACGCTGCGAAAAGTATTAGTTCTAAAAATGAACCTGGTGAAATTAGTGACGCAATAACTGATCTTATTGAAGACCAAACACAATCCGTTCCTGGTCAAGTGAACACAAATTCTGCGAAGAATGAGCTACTCGATACGCCTTCTGGAGACCCTGCGAATTTTTTTAGTTCTGATTGTTCAGAAAGAAAGTCTAATAACCCGCCTCAGTTGCGAGAGAAACATGCGTATAAAAAAAGCTCAAAATTATCGAAGAAGTATATATTAAGGTCGTTAGGAAGCAGTGACAGAACTCTGCGGTCAAGGACAAAAGATAATAAACCTAAAGATCCTGAACCAATTAATACTGTTGCTGATGTTAATAATGATGAAATGAAGACAAAAGAAAGGAAGAAGAAGAAGAAGAAAAAGACAAGAAAAGAGGGAATTAATGATCAATTTTCTAGAATCAGAGCTCAATTGAGATATTATCTGAACCGAATAAGCTACGAACAAAACTTGATCGATGCCTATTCTACTGAAGGATGGAGAGGAAGCAGTATGGAAAAATTAAAACCTGAGAAGGAGATTCAACGGGCTAAGTCCGAAATTCTTCGACGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGCGCTGAAGGAAGGCTTCCTGAATCTTTGTTTGACTCCGAGGGAGAGATTGATAGTGAGGATATATTTTGTGCGAAATGCCATTCCAAAGCTTTGGGTACTGATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGTTATCACCAGCTCTGTTTGGATCCTCCATTGTTAACCGAAGACATTCCACCTGGCGATGAGAATTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATCGAGCTTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACCGACACCTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATCACAACTTGGGACTTCCTTCCGACGATTCTGATGATGATGACTACAATCCTGATGGTCCAGAGGACGGTCCAGAGGATGTGGAGGTTGAAGAAGGTGGATCAAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCACACCAAGAGGATCAATACATGGGACTTCCTTCCGAAGATTCGGAGGATGATGATTATGATCCTGAAGCTCCCATCCTTAGTGATAAAGCAACTGAAGAAAGCTCAAGCTCTGATTTCATATCTGACTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCTGCTGGACAAGATGGTGATGTCACATCTGCATCGTTGGGTGATGTTAAGAACATCAAAGGTTCTAGCAGAAAAAAACATAAGAAACCATCTATAGCTGATGAACTTTCATCTTTACAAGAGCCGGGTATCGGTCAAGAGGATTTGACTCCTGTTTCTGGGAAAAGAAACGTGGAAAGGCTGGACTATCAAAAGCTGTATGAAGAAACATACCACAGTGATACTAGTGATGATGAAGATTGGGCTGCCACTGCTACTCCAAGTAGAAAAAAGAAACACTCTGGCAAAATGACTCCAGTATCACCGAATGGAAATGCCTCAAATAATTCCAGACATACTGCTACGTGGAACACCAATCAGCATAAAGTTGAAAAGACAAATAATTCACCCACCAAAACACTTGAAGGATGTACAGAATCTGGTTCCAGGGGTAAAAGACGTGGATCTTCATACAAAAAACTTGGAGAAGCTGTTGTTCAGAGACTTTACAAATCTTTCAAAGAAAATCAGTATCCGGAACGGTCCACAAAAGAAAGCTTGGCGCAAGAACTTGGAGTCACTTTTCAACAGGTTGACAAATGGTTTGGCAATACTCGATGGAGCTTTCGGCATTCACCACGTATGCAGGCTAGTCCAGGTAGTAATGCTTCGCAGCAGGCCACCGACAGCGGAGCTGAAAATAAAGGGGAGAGAGGTAATGCTTCGCAGCAAGCCACTGACAGCGGAGCCGAAGATAAAGGAGAGAAGGAACATGGATTAGTTTCCCAGGAGGCTAGTGGGGAAAAATCAAGAACCCGAAGTTCTAAGAAAAGGAAGCGTTTGTCTGAGCCACAGGCATCTGAAACAGGGCTGGTTCATAGCGGCCCAACCACCGATTCCTCGCCGAGAGTTGATACAGGCAATACAATGAAAAAAAAGAAAGGGAAATGA 2958 0.4175 MNISTGNSASNKDCATEKMGTEQCDLSKKTAQIGDECLDNEQRVHGTVLTDSVIDEKSNEVSVNVTDNSVIQLPELPCPYSENTCQTLESSCLQQSTSEIKCPQNVKNEAGETRDAVPALVVVEEQTQSVPAQVNSDSVNEPLDPPYGDVTENIKSGPGQMSDAVTGFVEDHTQSVPAQVNRDSVNELLDMPSGDVTENISSKNEPGEMSDAVTDLVEDQTQSVPAQVNTCAAKNELLGTPSGDAAKSISSKNEPGEISDAITDLIEDQTQSVPGQVNTNSAKNELLDTPSGDPANFFSSDCSERKSNNPPQLREKHAYKKSSKLSKKYILRSLGSSDRTLRSRTKDNKPKDPEPINTVADVNNDEMKTKERKKKKKKKTRKEGINDQFSRIRAQLRYYLNRISYEQNLIDAYSTEGWRGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCHSKALGTDNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDENWLCPGCDCKDDCIELVNDLLGTSLSLTDTWERVFPEAATAAGSILDHNLGLPSDDSDDDDYNPDGPEDGPEDVEVEEGGSSSDESEYASASEKLEDSHQEDQYMGLPSEDSEDDDYDPEAPILSDKATEESSSSDFISDSEDLAATIKDNMSAGQDGDVTSASLGDVKNIKGSSRKKHKKPSIADELSSLQEPGIGQEDLTPVSGKRNVERLDYQKLYEETYHSDTSDDEDWAATATPSRKKKHSGKMTPVSPNGNASNNSRHTATWNTNQHKVEKTNNSPTKTLEGCTESGSRGKRRGSSYKKLGEAVVQRLYKSFKENQYPERSTKESLAQELGVTFQQVDKWFGNTRWSFRHSPRMQASPGSNASQQATDSGAENKGERGNASQQATDSGAEDKGEKEHGLVSQEASGEKSRTRSSKKRKRLSEPQASETGLVHSGPTTDSSPRVDTGNTMKKKKGK 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05802 985 Pfam Homeodomain 834 877 IPR001356 GO:0003677
Trre1g05802 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 542 IPR013083 -
Trre1g05802 985 MobiDBLite consensus disorder prediction 272 307 - -
Trre1g05802 985 FunFam Homeobox protein HAT3.1 823 892 - -
Trre1g05802 985 MobiDBLite consensus disorder prediction 651 665 - -
Trre1g05802 985 MobiDBLite consensus disorder prediction 272 384 - -
Trre1g05802 985 SUPERFAMILY FYVE/PHD zinc finger 469 537 IPR011011 -
Trre1g05802 985 MobiDBLite consensus disorder prediction 774 814 - -
Trre1g05802 985 Pfam PHD-finger 479 534 IPR019787 -
Trre1g05802 985 MobiDBLite consensus disorder prediction 339 354 - -
Trre1g05802 985 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 273 981 - -
Trre1g05802 985 MobiDBLite consensus disorder prediction 918 933 - -
Trre1g05802 985 SMART PHD_3 479 532 IPR001965 -
Trre1g05802 985 CDD PHD_PRHA_like 479 531 IPR045876 -
Trre1g05802 985 Gene3D - 823 892 - -
Trre1g05802 985 MobiDBLite consensus disorder prediction 729 763 - -
Trre1g05802 985 MobiDBLite consensus disorder prediction 613 630 - -
Trre1g05802 985 MobiDBLite consensus disorder prediction 956 974 - -
Trre1g05802 985 ProSiteProfiles 'Homeobox' domain profile. 821 881 IPR001356 GO:0003677
Trre1g05802 985 MobiDBLite consensus disorder prediction 878 917 - -
Trre1g05802 985 MobiDBLite consensus disorder prediction 578 606 - -
Trre1g05802 985 ProSiteProfiles Zinc finger PHD-type profile. 477 534 IPR019787 -
Trre1g05802 985 CDD homeodomain 821 881 IPR001356 GO:0003677
Trre1g05802 985 ProSitePatterns Zinc finger PHD-type signature. 480 531 IPR019786 -
Trre1g05802 985 MobiDBLite consensus disorder prediction 570 830 - -
Trre1g05802 985 SUPERFAMILY Homeodomain-like 821 884 IPR009057 -
Trre1g05802 985 SMART HOX_1 820 885 IPR001356 GO:0003677
Trre1g05802 985 MobiDBLite consensus disorder prediction 878 985 - -
Trre1g05802 985 FunFam Homeobox protein HAT3.1 460 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05802 Trre-Chr1 62815423 62821419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05802 375 882 Homeobox Transcription Factor Family AT3G19510 47.505 7.41e-130 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Trre1g05802 PHD 1.9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05802 - - cam:101500744 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05802 1 62815423 62821419 Trre1g05802 1 62815423 62821419 ECH