Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05790 ATGCTGCGTTTGTGCTTCAACCCTCTCGATTATTGCTTCCGACGCCGTGGTGCCTCTGATTTTCTTCTCTGGCACACCGACTTAAAACCTCATGCTTCCGGTGATTTCTCTATAGCCGTCGCTCAGGCTAATTACAGCCTCGAAGATCAGAGTCAAGTATTTACCTCACCTTCCGCTACCTATGTCGGTGTTTACGACGGTCATGGTGGTCCCGAAGCTTCTAGATTCGTCAACAACCGTCTTTTCCCTTATTTGCACAAATTTGCCTCTGAGCAAGGGGGATTGTCAGCAGATGTGATAAAAAAAGCGTTTAGTGCGACCGAGGAGGATTTTTTGCATTTGGTTAAGTTGTCGTTACCAGTTAGTCCTCAGATTGCGTCTGTTGGATCGTGCTGTCTTTTCGGTGCAATTTCTAATAATGTGTTGTATGTGGCTAACCTCGGAGACTCCAGAGTTGTTCTTGGCAGGAGGTATTCTGAGAACAAGAATTATCCGGTGGAGGCTGTGCGCTTGTCAACGGATCATAATGTAGCAGACGAGGAGGTGAGGAGAGAAGTCGAGGCTCTCCACCCTGATGATTCGCACATTGTGGTTTATACGCGTGGAGTTTGGAGGATTAAGGGCATCATACAGGTGTCTAGATCTATTGGCGATGTGTATTTGAAGAGACCAGATTTCTACAGAGACCCCATTTTTCGGCAATTTGCAAATCCTATTCCTTTGAAGCATCCAGTTATGACAGCTGAACCATCAGTCATTATTAGGGAGCTAGAGTCAGATGATTTATTCTTGATATTTGCATCAGATGGCCTTTGGGAACAACTAAGTGATGAAGCCGCAGTTGATATTGTTTTCAAATCTCCAAGAGCCGGAATTGCCAAGAGACTAGTAAGAGCTGCTCTTCAGGAAGCTGCAAAGAAAAGAGAGATGAGATATGCTGACATAAAGAAAATTGACAAAGGAATTAGACGACACTTCCATGACGATATCACTGTTATTGTAATCTATCTTGATCACCATGGAGGTTCTTCTAGTGATGGTGGATTTAAGCAAACTGCTGTTGGCTATACAACTGCCCCTGTTGATATATTTTCTCTAAATGCTGATGAAGCTGAGAAGAGTATGCTTGGTTCAGTTGCCTAA 1143 0.4401 MLRLCFNPLDYCFRRRGASDFLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNNRLFPYLHKFASEQGGLSADVIKKAFSATEEDFLHLVKLSLPVSPQIASVGSCCLFGAISNNVLYVANLGDSRVVLGRRYSENKNYPVEAVRLSTDHNVADEEVRREVEALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPIFRQFANPIPLKHPVMTAEPSVIIRELESDDLFLIFASDGLWEQLSDEAAVDIVFKSPRAGIAKRLVRAALQEAAKKREMRYADIKKIDKGIRRHFHDDITVIVIYLDHHGGSSSDGGFKQTAVGYTTAPVDIFSLNADEAEKSMLGSVA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05790 380 FunFam Probable protein phosphatase 2C 42 26 345 - -
Trre1g05790 380 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Trre1g05790 380 Pfam Protein phosphatase 2C 56 306 IPR001932 -
Trre1g05790 380 SMART PP2C_SIG_2 37 337 IPR001932 -
Trre1g05790 380 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
Trre1g05790 380 SMART PP2C_4 29 335 IPR001932 -
Trre1g05790 380 SUPERFAMILY PP2C-like 44 339 IPR036457 -
Trre1g05790 380 CDD PP2Cc 48 337 IPR001932 -
Trre1g05790 380 PANTHER PROTEIN PHOSPHATASE 34 336 IPR015655 GO:0004722|GO:0006470
Trre1g05790 380 Gene3D - 26 343 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05790 Trre-Chr1 62736789 62738864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05790 17 363 PP2C-type Phosphatase Gene Family AT3G51370 54.648 1.82e-139 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05790 - K01102 gmx:100812137 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05790 1 62736789 62738864 Trre1g05790 1 62736789 62738864 ECH