Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05789 ATGTTCCTGCGCCTTGGGTCCAACAATGATCAAGTTGTTGCTCTTCGCGCCTCCGGAAATAAAAAATGTTATATTCAAGGCATAGTTGACTTCGTGTTCGGCAATGAGAGGTCCCTTTATGAGGGTTGCACTCTAAAGTCAATAGACAAAAATATCGGCTATATCACGGCTCAAAGTCGTCCAATTTTGTCAATTGAGACCGGATTTTCTATAACAAACAGCAAAGTAATAAGTAATGGTCAAGTGTATCTCGGGAGACTATGGAGAGCATTCTCAAGAGGAATTTTCTCTTATAATTACATGGAAAATATTGTTCTCCCTCAAGGACGGGATGACGCTATGAGCATGCAGGACTGCGCACTACGAGAATATAAATGTAGTGGACCTGGATCAAACTTTGCTAGAAGAGCTCCATCAGTTCACAGATTGATAGACATGGAGGTTCAGCCATCCATTGGCATTCACTTCATTGAAGGAGATACTTGGCTGATTAACCCAATTTTATGA 507 0.4122 MFLRLGSNNDQVVALRASGNKKCYIQGIVDFVFGNERSLYEGCTLKSIDKNIGYITAQSRPILSIETGFSITNSKVISNGQVYLGRLWRAFSRGIFSYNYMENIVLPQGRDDAMSMQDCALREYKCSGPGSNFARRAPSVHRLIDMEVQPSIGIHFIEGDTWLINPIL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05789 168 Gene3D - 5 166 IPR012334 -
Trre1g05789 168 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 21 163 - -
Trre1g05789 168 Pfam Pectinesterase 21 137 IPR000070 GO:0030599|GO:0042545
Trre1g05789 168 SUPERFAMILY Pectin lyase-like 6 163 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05789 Trre-Chr1 62723951 62724617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05789 21 163 Carbohydrate Esterase AT1G05310 37.662 3.19e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05789 K01051 - mtr:25495763 184.111