Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05788 ATGACGAGCGCTTCAGAACTATTCCACATCAGAAGACACCGATTAGGACGAAATGATATCGATTCAGATTCAACTTTCCACTCTTCACCACCTACTCCCGATTTCCATCACCACCGCATTCACGATTCCGACGATGACGATTCTCTCCGTATCCGCCGCCACTACCACGTCCGCCGCCTCCGCCACCCGGAGCGTGCATCTGAAAGATTTGATGGGAGGTATCGTCGGGCGCTGTTAAATGACAGTGTTGATTCTGGAGAAAGTGTGAGAGGCGGTGAAAGATTACCTGTTGATGTGAGACTTGCGCGAGAAAGACTCCTTCAGAGGTTGAGAGGAGGAGAGCCTCTAGATAGAAACAGGCAATACGATAGAGATTCAATGGACGAAGATCAAGAAAGTGAGTTATCAAGTGAAACTGTGGACTCTATAGTTAACGACTTGACTTCTACGATGGCAAGGTTCCAGCTCTTGCACGCACCAACCCAAAAGCCACCCGGACTCACTCAGGAGGCGCTGGACTGTTTGCATGTTAAAGTTTTTAGCAGCAGTGAGACCCTATCAGAATCCAGGGTACTGCAGGATTGTGGGATATGCTTGGAATCTTTCACAGACGGAGATAAACTAATCCATTTGCAATGTGGTCATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCAGTTGTGGAGACTGTCCATACTGTCGAAGATGTATAGTTGTGAATAGCGAGTCACCTTCCATAGAATGA 750 0.4733 MTSASELFHIRRHRLGRNDIDSDSTFHSSPPTPDFHHHRIHDSDDDDSLRIRRHYHVRRLRHPERASERFDGRYRRALLNDSVDSGESVRGGERLPVDVRLARERLLQRLRGGEPLDRNRQYDRDSMDEDQESELSSETVDSIVNDLTSTMARFQLLHAPTQKPPGLTQEALDCLHVKVFSSSETLSESRVLQDCGICLESFTDGDKLIHLQCGHKFHSACLDPWIRSCGDCPYCRRCIVVNSESPSIE 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05788 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 240 IPR013083 -
Trre1g05788 249 SUPERFAMILY RING/U-box 178 242 - -
Trre1g05788 249 CDD RING-H2_PA-TM-RING 194 236 - -
Trre1g05788 249 MobiDBLite consensus disorder prediction 112 139 - -
Trre1g05788 249 PANTHER SI:CH211-59O9.10 26 242 - -
Trre1g05788 249 MobiDBLite consensus disorder prediction 19 46 - -
Trre1g05788 249 MobiDBLite consensus disorder prediction 112 127 - -
Trre1g05788 249 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Trre1g05788 249 MobiDBLite consensus disorder prediction 32 46 - -
Trre1g05788 249 Pfam Ring finger domain 194 236 IPR001841 -
Trre1g05788 249 SMART ring_2 195 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05788 Trre-Chr1 62714839 62718106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05788 1 240 C3H Transcription Factor Family AT1G49850 43.580 2.31e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05788 - - gmx:548042 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05788 1 62714839 62718106 Trre1g05788 1 62714839 62718106 ECH