Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g05788 | ATGACGAGCGCTTCAGAACTATTCCACATCAGAAGACACCGATTAGGACGAAATGATATCGATTCAGATTCAACTTTCCACTCTTCACCACCTACTCCCGATTTCCATCACCACCGCATTCACGATTCCGACGATGACGATTCTCTCCGTATCCGCCGCCACTACCACGTCCGCCGCCTCCGCCACCCGGAGCGTGCATCTGAAAGATTTGATGGGAGGTATCGTCGGGCGCTGTTAAATGACAGTGTTGATTCTGGAGAAAGTGTGAGAGGCGGTGAAAGATTACCTGTTGATGTGAGACTTGCGCGAGAAAGACTCCTTCAGAGGTTGAGAGGAGGAGAGCCTCTAGATAGAAACAGGCAATACGATAGAGATTCAATGGACGAAGATCAAGAAAGTGAGTTATCAAGTGAAACTGTGGACTCTATAGTTAACGACTTGACTTCTACGATGGCAAGGTTCCAGCTCTTGCACGCACCAACCCAAAAGCCACCCGGACTCACTCAGGAGGCGCTGGACTGTTTGCATGTTAAAGTTTTTAGCAGCAGTGAGACCCTATCAGAATCCAGGGTACTGCAGGATTGTGGGATATGCTTGGAATCTTTCACAGACGGAGATAAACTAATCCATTTGCAATGTGGTCATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCAGTTGTGGAGACTGTCCATACTGTCGAAGATGTATAGTTGTGAATAGCGAGTCACCTTCCATAGAATGA | 750 | 0.4733 | MTSASELFHIRRHRLGRNDIDSDSTFHSSPPTPDFHHHRIHDSDDDDSLRIRRHYHVRRLRHPERASERFDGRYRRALLNDSVDSGESVRGGERLPVDVRLARERLLQRLRGGEPLDRNRQYDRDSMDEDQESELSSETVDSIVNDLTSTMARFQLLHAPTQKPPGLTQEALDCLHVKVFSSSETLSESRVLQDCGICLESFTDGDKLIHLQCGHKFHSACLDPWIRSCGDCPYCRRCIVVNSESPSIE | 249 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g05788 | 249 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 240 | IPR013083 | - | |
Trre1g05788 | 249 | SUPERFAMILY | RING/U-box | 178 | 242 | - | - | |
Trre1g05788 | 249 | CDD | RING-H2_PA-TM-RING | 194 | 236 | - | - | |
Trre1g05788 | 249 | MobiDBLite | consensus disorder prediction | 112 | 139 | - | - | |
Trre1g05788 | 249 | PANTHER | SI:CH211-59O9.10 | 26 | 242 | - | - | |
Trre1g05788 | 249 | MobiDBLite | consensus disorder prediction | 19 | 46 | - | - | |
Trre1g05788 | 249 | MobiDBLite | consensus disorder prediction | 112 | 127 | - | - | |
Trre1g05788 | 249 | ProSiteProfiles | Zinc finger RING-type profile. | 195 | 236 | IPR001841 | - | |
Trre1g05788 | 249 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
Trre1g05788 | 249 | Pfam | Ring finger domain | 194 | 236 | IPR001841 | - | |
Trre1g05788 | 249 | SMART | ring_2 | 195 | 235 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g05788 | Trre-Chr1 | 62714839 | 62718106 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g05788 | 1 | 240 | C3H Transcription Factor Family | AT1G49850 | 43.580 | 2.31e-44 | 148 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g05788 | - | - | gmx:548042 | 280.796 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre1g05788 | 1 | 62714839 | 62718106 | Trre1g05788 | 1 | 62714839 | 62718106 | ECH |