Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05787 ATGGATGACACTGTTAATGAAGAGCATCGCACGGCTAGTGCACCTGTTGCTTCTCCTAAGAGGGACGTAGCTTTATTTGAAGGGGACAAAGATTTTGAGCCGCCCAATGGCATTGAATTTGAATCTCATGAAGCTGCATATACATTTTATCAAGAATATGCTAAATCTATGGGATTCACTACTTCAATTAAAAACAGCAGACGATCAAAGAAGACAAAAGAATTCATTGACGCCAAATTTGCATGTTCTAGGTATGGAGTTACACCTGAGTCTGATAGTGGTAGCAGTCGAAGACCAAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCATGTGAAGAAAAAGGCGGATGGAAAGTGGACCATTCATGAATTTATAAAGGATCACAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAGTTGGCTGAAAAGAATAATATTGATATCTTGCATGCCGTTAGTGAACGCACGAGAAAGATTGAAGAAGGATCATTATCTGAAGAGAGTTACAATGTTGCTATCCGTACACTTGTCAATTCCCTGAAGAACTGTGTACATGTAAATAACTCTAACGGCAATGGTGCAGAAGCCGGCAACAATGGTTGCAGTCTTCGTGAAGCAGAAGAAAATCAGAGTACCCTTGCTGTGAAACCAAGTAAGAAGAGGAACACAACTAGGAAAAGAAAGGTGCAACAAGAGCAGCATCCTGTACTTGTCGACGCTCAAGATAACCTGCAGCAAATGGATAATCTTGGCTCGGATGCAATGAACCTTAATGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCATGTACAGTTGAACTTAATGGAGCCACCTCAAGATGGTTACTATGTTAATCAGCAGAGCATGCAAGGCCTGGGTCCGTTGAATTCTATGGGTCCAAGCCATGATGGATTTTTCGGAACACAACAAAGCATTCATGGGATGGGAGGGCAATTGGAATATCGCCCAACAACCAGTTTTGGATATAGCCTTCAGGATGAGCATGATCCACATTTTCACAGCAACAATTCAAGAAATACTTAG 1077 0.4113 MDDTVNEEHRTASAPVASPKRDVALFEGDKDFEPPNGIEFESHEAAYTFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKKKADGKWTIHEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKIEEGSLSEESYNVAIRTLVNSLKNCVHVNNSNGNGAEAGNNGCSLREAEENQSTLAVKPSKKRNTTRKRKVQQEQHPVLVDAQDNLQQMDNLGSDAMNLNGYYGTQQNVQGLHVQLNLMEPPQDGYYVNQQSMQGLGPLNSMGPSHDGFFGTQQSIHGMGGQLEYRPTTSFGYSLQDEHDPHFHSNNSRNT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05787 358 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 27 170 - -
Trre1g05787 358 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Trre1g05787 358 MobiDBLite consensus disorder prediction 338 358 - -
Trre1g05787 358 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g05787 358 MobiDBLite consensus disorder prediction 344 358 - -
Trre1g05787 358 MobiDBLite consensus disorder prediction 214 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05787 Trre-Chr1 62707356 62710397 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre1g05787 FAR1 1.4e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05787 - - mtr:112416729 324.324