Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05778 ATGAGTTGCAACGGTTGCCGTGTGTTGAGAAAAGGATGCAGTGAGGATTGCATGCTACGAGATTGCCTAAAATGGATACAAAATCCACAAGCACAAGCTAACGCCACCGTGTTCGTCACCAAATTCTTCGGCCGTGCAACCCTCTTGTCTTTCCTTTCCTCCGTTCCCCCCAACCAAAGACCCGGTTTGTTCCAGTCACTTATGTTAGGTGTTGAGCAAGTGCTTGGAGGTAGCGGTGGCGCGTTGACACCGCTACCTGATCTTCATGAGTGTACTGAAAAGGGAAGTAGTTCTGGTGATCATCAACAAGAGCTAATAATGATGGAAGAAAATTATTATAATGAATTAGAAGAAACACAGTCGGAGAGAGTGGTGGGAGGAAGGTGCCACCAAGCAAAAAAGCAACGGACGGAGAGACACGAGTCCGAGGAATCGGAGTCGTCTACGTTGGGAAGTAGAACAGAAAGAACAGAGGATTGTTCTTATGTTTATGCTAATTCTCAAACTCATCAAAGGAAGCAGCTCCTTACACTATTCTTATGA 543 0.4567 MSCNGCRVLRKGCSEDCMLRDCLKWIQNPQAQANATVFVTKFFGRATLLSFLSSVPPNQRPGLFQSLMLGVEQVLGGSGGALTPLPDLHECTEKGSSSGDHQQELIMMEENYYNELEETQSERVVGGRCHQAKKQRTERHESEESESSTLGSRTERTEDCSYVYANSQTHQRKQLLTLFL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05778 180 Pfam Lateral organ boundaries (LOB) domain 2 69 IPR004883 -
Trre1g05778 180 ProSiteProfiles LOB domain profile. 1 106 IPR004883 -
Trre1g05778 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 68 - -
Trre1g05778 180 MobiDBLite consensus disorder prediction 124 153 - -
Trre1g05778 180 MobiDBLite consensus disorder prediction 124 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05778 Trre-Chr1 62657843 62658616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05778 1 88 AS2 family AT3G49940 50.435 5.82e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g05778 LOB 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05778 - K07025 tpra:123921551 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05778 1 62657843 62658616 Trre1g05778 1 62657843 62658616 ECH
Trre9g00756 9 5710845 5711786 Trre1g05778 1 62657843 62658616 PCT