Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05776 ATGGGTTCAAGATCTGTGGAAGGAGAGGAATCATCGCTCGCTGATGATTATGATGCCTTGATTTCAACCACTGATGTTGAGCTTCTCAAGCGAGCTTGGCGTAATGAAAAGGCTGCCCCTGAGATTCTTCGTTTTGAATCTGATTTGATCACCCGTGTCAGAGGACAGATTGAATTAATGGAAGAAACCGTGGAGGAGAAATTGACTATTGGTACCGACCCTCTTTCAGTATCTCTGTATCAGATGGACTTAGATAGAACCTTATTTCTATTAAGGTCATATCTTCGCATCCGCATCCTGAAGATCGAAAAGTACATGTTCCACATCCGAAAAACTGAAGAACTTTGGAACAGGCTTTCTAAGGATGAGAAATTTTTCACCGAAAGGTGCACAGATGACCTAAAGAAACATCTGGAGGAGAGTGTTCTATCAAACCTGCCTGAAAATTATCAGTCCTATGAGAGGCAATCTGTAATCAGTGAAGAGGATGACATGGTTCCAGAACCACGACTAGACACGTTTGTTTTGTGTAGAAGTAAAGAATATCTCACAGGCATTCAACTTGAAGATGGACCTGTTGATGACAGGTCAAAGCTGTTTGAAATGGAGCCTGATGTCCTTTACTTTATATGTTACAAATCTATTAAGCCGCTTGTAGAGAGTGGCAAAATTGATCTACTATGA 684 0.4108 MGSRSVEGEESSLADDYDALISTTDVELLKRAWRNEKAAPEILRFESDLITRVRGQIELMEETVEEKLTIGTDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIRKTEELWNRLSKDEKFFTERCTDDLKKHLEESVLSNLPENYQSYERQSVISEEDDMVPEPRLDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEPDVLYFICYKSIKPLVESGKIDLL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05776 227 Pfam DNA replication complex GINS protein SLD5 C-terminus 169 227 IPR031633 -
Trre1g05776 227 SUPERFAMILY PriA/YqbF domain 171 227 - -
Trre1g05776 227 Pfam GINS complex protein 72 124 IPR021151 -
Trre1g05776 227 CDD GINS_A_Sld5 25 143 IPR038749 -
Trre1g05776 227 PANTHER SLD5 PROTEIN 9 227 IPR008591 GO:0006261
Trre1g05776 227 Gene3D - 12 217 - -
Trre1g05776 227 PIRSF GINS_Sld5 2 227 IPR008591 GO:0006261
Trre1g05776 227 FunFam DNA replication complex GINS protein SLD5 10 217 - -
Trre1g05776 227 CDD GINS_B_Sld5 169 227 IPR031633 -
Trre1g05776 227 SUPERFAMILY GINS helical bundle-like 22 157 IPR036224 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05776 Trre-Chr1 62641273 62643306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05776 1 165 Core DNA Replication Machinery Family AT5G49010 63.030 2.98e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05776 K10735 - gmx:100784291 340.887