Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05774 ATGGCTTTAGAGTTACAAGCTCTCAATTCTTCTCCAACAGGAGCTACTACTCCTTTCCCAACTTTCAAGCCACAACAAGATCAAGAGATTCATGAACGTGACTCTTTCGTTAAGAAGAAAAGATCAAAACGACCGCGTATTAGTAATCCACCAACTGAAGAAGAGTATCTTGCTCTTTGTCTCATCATGCTTGCTCAAAGCGGCAACAAAAACAACAACAACAAAATCAACGGCTCTGATGATTTTATTCATCATCAAACTGAACAACCATCTCCTTCACCGCCGTCACCACCGTCACCGGTGAAGCTGAATCACAGGTGCAGTGTATGTAACAAAGCTTTTCCATCTTATCAAGCACTTGGTGGTCATAAAGCAAGTCACCGCAAATCCTCATCTGAAAACCAAACCACCGCCGTAATTAACGACACCGTTGCTGTCACAACCTCAACCGTTACATCCGGTAAGATGCACGAGTGTTCTATCTGTCATAAGAGTTTCCCTACCGGTCAAGCTCTTGGTGGACACAAACGATGCCACTACGATGGAGGTAACCACAATAACAGTAACAGCAACGTGAACGCTAATAACAACAGTGGAATCACAATCTCTGACGGCGCCGCCGCTTCTTCTTCCATCAGCCACCGTGGATTTGATCTCAATTTACCGGCGCCTCTCACTGAATTCTGGTCTCCGTTGGGATTAGGCGGTGGAGATTCGAAGAAGAATAAGGTTAACGTTAACCTAGCCGGAATCGGTGAACAAGAGGTGGAAAGTCCGTTGCCGGTAACCGCCAAAAGGCCGCGTTTGTTTTCGGGGGAAGAAGACAATGATAAAACGGCGTAG 843 0.4591 MALELQALNSSPTGATTPFPTFKPQQDQEIHERDSFVKKKRSKRPRISNPPTEEEYLALCLIMLAQSGNKNNNNKINGSDDFIHHQTEQPSPSPPSPPSPVKLNHRCSVCNKAFPSYQALGGHKASHRKSSSENQTTAVINDTVAVTTSTVTSGKMHECSICHKSFPTGQALGGHKRCHYDGGNHNNSNSNVNANNNSGITISDGAAASSSISHRGFDLNLPAPLTEFWSPLGLGGGDSKKNKVNVNLAGIGEQEVESPLPVTAKRPRLFSGEEDNDKTA 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05774 280 SMART c2h2final6 157 179 IPR013087 -
Trre1g05774 280 SMART c2h2final6 105 127 IPR013087 -
Trre1g05774 280 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Trre1g05774 280 Gene3D Classic Zinc Finger 103 179 - -
Trre1g05774 280 Pfam C2H2-type zinc finger 157 181 - -
Trre1g05774 280 Pfam C2H2-type zinc finger 105 129 - -
Trre1g05774 280 MobiDBLite consensus disorder prediction 252 280 - -
Trre1g05774 280 MobiDBLite consensus disorder prediction 1 24 - -
Trre1g05774 280 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Trre1g05774 280 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 223 IPR044653 GO:0003700
Trre1g05774 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 179 IPR013087 -
Trre1g05774 280 SUPERFAMILY beta-beta-alpha zinc fingers 105 179 IPR036236 -
Trre1g05774 280 MobiDBLite consensus disorder prediction 1 50 - -
Trre1g05774 280 MobiDBLite consensus disorder prediction 71 89 - -
Trre1g05774 280 MobiDBLite consensus disorder prediction 71 104 - -
Trre1g05774 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05774 Trre-Chr1 62614510 62615352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05774 3 269 C2H2 Transcription Factor Family AT1G27730 39.855 1.34e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g05774 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05774 - - psat:127091014 359.377