Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05771 ATGGAACCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCTGAGGAAGCTGATTTCATGGCTCAGTTCCTTAGTGGTAATGGAAATACAAGTTTTGGCATGCCATCTTGTTTTCCTAATTCATATCTTGCAAATGCTAATTTTATGTGTTTCTCCAATGAGAGTAGCATTAGTACTGATAATAGTGCTAATACATTTTCCACCACAACAAGTAGTGATTTGGCAACAAGCATTGATTCCTTGTTATTTTGTTTGGGAGATGCCAAATTAAGTCCACAATATTTTGATGATAACTTAAGCAAACAGATAAATTATGAAAGCCTTGATCATGAAGAGTCAGATTTTGAACCAGTGAGACCGGTTTTTGCCGCGGACATGGAGAACACTGCAAAAAGATTTAGAAGCTCAATAGAGGTCTCAAAAAACATGAGGAATGTTAGGAAGTGTACAAATTCTGCTTCTGTGAGTAACAATGAAGAGGGCCTAATGTGGCATGGCTCAAATGCTTCTGTAGAGCTAAATAGAGGAACATCTCCAAGTCTAAGCCCAAAAGAGCCTAAAGCACCTAATTTATATAGAAAATCAAAAGCAACAAGTGGTCTTGCCACTGATGCACAGAGCATTTATGCCAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTGCAAACCCTTGTCCCAAATGGAACCAAGGTTGATATTAGCACAATGCTTGAGGAAGCTGTACAATATGTGAAGTTTTTGCAGCTTCAAATTAAGCTTCTGAGTTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGATTAGACATAAGCTTTAATTAA 867 0.3749 MEPAQLISEEWDSLSGQYTAEEADFMAQFLSGNGNTSFGMPSCFPNSYLANANFMCFSNESSISTDNSANTFSTTTSSDLATSIDSLLFCLGDAKLSPQYFDDNLSKQINYESLDHEESDFEPVRPVFAADMENTAKRFRSSIEVSKNMRNVRKCTNSASVSNNEEGLMWHGSNASVELNRGTSPSLSPKEPKAPNLYRKSKATSGLATDAQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGINIGLDISFN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05771 288 Pfam Helix-loop-helix DNA-binding domain 217 257 IPR011598 GO:0046983
Trre1g05771 288 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 278 - -
Trre1g05771 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 256 IPR011598 GO:0046983
Trre1g05771 288 SMART finulus 213 262 IPR011598 GO:0046983
Trre1g05771 288 FunFam Basic helix-loop-helix transcription factor 208 265 - -
Trre1g05771 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 274 IPR036638 GO:0046983
Trre1g05771 288 Gene3D - 209 273 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05771 Trre-Chr1 62581808 62583326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05771 173 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 69.643 6.99e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g05771 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05771 - - tpra:123881860 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00029 9 397000 398642 Trre1g05771 1 62581808 62583326 PCT