Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05770 ATGGAAGCTGCCCAATTGATTTCTGAAGAATGGGATTCTCTTAGTGGACAGTACACAACTGAGGAATCTATTTTCATGACTCAGTTCCTTGGTGGAACCTATTCATGTGATTTGGCAACAAACATTGATTCCTTGTTATTTTCTTTAGAAGATGCCAAATTTAGTACACAATATTTGGATGATAGTTTAATTAGCAAACAGATAGATTATGAAACTTCAGAATTTGTTCATGCTAAGAACAATTTGCAGCTTAAGAGGGAGCATGATAATGAAATGATGATGGTTTCTGAACCTTCTTCAGAAGAGGATTGTAGTCAAAACATGGAGAACCCTTCAAAAAGATTTAGGAGCTCAATAGAGGTCTCAAGAAACATGAGGCATGGGTTCAGCAACTGTTTTTCTCAGGTTGACGCAAATGCTTATATGGAGCTAAATGGAGGAACATCTCCAAGTCTAAGCCCAAAAGAACCTAAAGCACCTAATTTATGTAAAAATTCAAAAGCAACAAATGGTCCTGCCACTGATTCACAAAGCATTTATGCTAGAAGGAGAAGGGAAAGAATAAATGAAAGGTTGAAAATCTTACAAACCCTTGTCCCAAATGGAACCAAGGTTGATATTAGCACAATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTTCAAATTAAGGTTCTGAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGATTAGATCTAAGCTTTAATTAA 762 0.3635 MEAAQLISEEWDSLSGQYTTEESIFMTQFLGGTYSCDLATNIDSLLFSLEDAKFSTQYLDDSLISKQIDYETSEFVHAKNNLQLKREHDNEMMMVSEPSSEEDCSQNMENPSKRFRSSIEVSRNMRHGFSNCFSQVDANAYMELNGGTSPSLSPKEPKAPNLCKNSKATNGPATDSQSIYARRRRERINERLKILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSEDMWMYAPIAYNGINIGLDLSFN 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05770 253 SMART finulus 178 227 IPR011598 GO:0046983
Trre1g05770 253 FunFam Basic helix-loop-helix transcription factor 173 230 - -
Trre1g05770 253 MobiDBLite consensus disorder prediction 147 177 - -
Trre1g05770 253 Pfam Helix-loop-helix DNA-binding domain 182 222 IPR011598 GO:0046983
Trre1g05770 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 239 IPR036638 GO:0046983
Trre1g05770 253 MobiDBLite consensus disorder prediction 163 177 - -
Trre1g05770 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Trre1g05770 253 Gene3D - 174 239 IPR036638 GO:0046983
Trre1g05770 253 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 78 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05770 Trre-Chr1 62574531 62575987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05770 146 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 71.154 3.34e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g05770 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05770 - - tpra:123881860 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05770 1 62574531 62575987 Trre1g05770 1 62574531 62575987 ECH