Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05769 ATGGATCATTCTGAGCAAAGTTGTGAAGAATGGAGTTCTCTTAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGGCCAGTTACTTAATAACTGCCAAGTTCCTCAGCACCATTATGGAAATTTCAATTTGGAAACTCCATCTACATTGTGGCCACATGATTCCACAATAGTGACCATGAATAACAGTTCACATTTTCCTCAAAATTATGATACTAATAATAGTAACACTGATTTTTTGAGTTTTTTACAAGAAAGTAACTCCATTTCTGCTACTAACAATATATGTTTGAATGATCAAGTAGCCAACATTGGCTACATATCAATGGAGAATGCTCATTTTAGCACTTATAGTATTCAAGGGAATGATAGCCAACAGATAACTGAAAACACCGATGAAGAGTTTGGTCAAGAGGTTTCCGAATCAACGAAAGAAGGTATTAGCAACAACGTGAAAAAGCCACGAAAAAGATCTAGGAGCTCTATAAAGGTAGAAAAGAACAAGAGAAATGTTAAATCTAGGAAGAAACCAAAATCTGAGTTTATAAGCAACGCCGAAGAGGACGAAAGTACTGATATTCAGGAACAGAATTTGAGTTCAGAGGATGATGATTTCAATCCTTCACAAAAGGTAAATGAAGGAGGGTCTACAATCTTGAACCAAAACGATTCGACAGTTCTGAAGTTAAAGGGAAAAACAAGATGTGATAAAGGTTCTGCCTCTGATCCACAAGGTGTCTATGCAAAAAAAAAAAGAGAAAGAATAAATGAAAGGTTGAAAATCTTACAAAGCCTAGTCCCTAATGGAACCAAGGTAGATATCAGCACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGGTTCAGATTAAGCTTCTGAGTTCTGATGATCACTGGATGTATGCTCCTATTGCTTACAATGGAATGAACATTGGACTAAACCTTGATATTAATTATCCCAACCAAACTACCATAGAGCACATAAGAAAATAG 1002 0.3613 MDHSEQSCEEWSSLSGFYTAEEADFMGQLLNNCQVPQHHYGNFNLETPSTLWPHDSTIVTMNNSSHFPQNYDTNNSNTDFLSFLQESNSISATNNICLNDQVANIGYISMENAHFSTYSIQGNDSQQITENTDEEFGQEVSESTKEGISNNVKKPRKRSRSSIKVEKNKRNVKSRKKPKSEFISNAEEDESTDIQEQNLSSEDDDFNPSQKVNEGGSTILNQNDSTVLKLKGKTRCDKGSASDPQGVYAKKKRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLDINYPNQTTIEHIRK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05769 333 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 63 305 IPR045843 GO:0003700|GO:0006355
Trre1g05769 333 MobiDBLite consensus disorder prediction 133 219 - -
Trre1g05769 333 FunFam Basic helix-loop-helix transcription factor 241 298 - -
Trre1g05769 333 MobiDBLite consensus disorder prediction 201 219 - -
Trre1g05769 333 CDD bHLH_AtIND_like 241 303 - -
Trre1g05769 333 Gene3D - 248 301 IPR036638 GO:0046983
Trre1g05769 333 MobiDBLite consensus disorder prediction 154 176 - -
Trre1g05769 333 Pfam Helix-loop-helix DNA-binding domain 250 290 IPR011598 GO:0046983
Trre1g05769 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Trre1g05769 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 306 IPR036638 GO:0046983
Trre1g05769 333 SMART finulus 246 295 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05769 Trre-Chr1 62568921 62570334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05769 10 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 39.080 5.45e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g05769 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05769 - - tpra:123881885 591.652