Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05737 ATGCAATTGAGGAAGGGTGTTGATGCTGGCCGTAAGAAGCTACTAACCACGAAAGATGCCTTAACGTTTCTTGAGGCCGTAAAAGTTGCATTTCAAGATGAGAGGGAAAAGTATGATGAGTTTTTAAAAATTTTGAAGGATTTCAAAGCTTCCAAAATTAGTACAATTGGTGTCAGTTCAAGAGCGAAGGAGCTGCTTAAAGGACATAAAGATTTAATTTTGGGATTCAACAACTTCTTGCCAAAGGGATATGAAATTGATGTTCGTCGGAAGCAAACTGTGAACGATGCATTAGCGTTTCTTAAGGCCGTAAAAGTTGCTTTTCAAAATGAGACGGAGAAGTATGATGAATTTATAGAAATTTTGAAGGATTTTAAGGCTGGAAGAACCAATTCAATTGGTGTAACTTCACGAGTGAGGGAGCTATTTAAAGAGCATATACATTTAATTTTGGGATTCAACAACTTCTTGCCAAATGGATATCAATTTATCATTACTAATGAGTTGATTATTCAACTTATTTCACGTATGTAG 534 0.3558 MQLRKGVDAGRKKLLTTKDALTFLEAVKVAFQDEREKYDEFLKILKDFKASKISTIGVSSRAKELLKGHKDLILGFNNFLPKGYEIDVRRKQTVNDALAFLKAVKVAFQNETEKYDEFIEILKDFKAGRTNSIGVTSRVRELFKEHIHLILGFNNFLPNGYQFIITNELIIQLISRM 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05737 177 PANTHER SIN3B-RELATED 92 167 IPR039774 GO:0003714
Trre1g05737 177 SUPERFAMILY PAH2 domain 15 82 IPR036600 GO:0006355
Trre1g05737 177 FunFam Paired amphipathic helix protein Sin3 19 81 - -
Trre1g05737 177 ProSiteProfiles PAH domain profile. 90 160 IPR003822 GO:0006355
Trre1g05737 177 ProSiteProfiles PAH domain profile. 11 83 IPR003822 GO:0006355
Trre1g05737 177 FunFam Paired amphipathic helix protein Sin3 96 158 - -
Trre1g05737 177 Gene3D Paired amphipathic helix 96 158 IPR036600 GO:0006355
Trre1g05737 177 Gene3D Paired amphipathic helix 19 81 IPR036600 GO:0006355
Trre1g05737 177 Pfam Paired amphipathic helix repeat 36 80 IPR003822 GO:0006355
Trre1g05737 177 Pfam Paired amphipathic helix repeat 113 157 IPR003822 GO:0006355
Trre1g05737 177 SUPERFAMILY PAH2 domain 89 159 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05737 Trre-Chr1 62338078 62339370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05737 15 88 WRKY Transcription Factor Family AT4G12020 52.703 1.42e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g05737 PAH 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05737 K11644 - tpra:123882166 217.238