Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05732 ATGGACATGGTACAGCAAAGAAAGAAAACCACCGGACGTAAGAAGATCGAGATCAAGAAACTTGATAAAGAATCCAATAAACAGGTCACGTTCTCGAAAAGAAGACAAGGATTATTCAAAAAAGCAAGTGAACTTTGTATTTTATGTGATGTTCGTGCGGCTATCATTGTTTTTTCTCCGGCCGATAAACTATATAGTTTTGGTCAACCAAACACCGATGTAATCCTCACTAGCTACATCAATGGAACCACTGAGTTCGAGGATGCGAAGTCAACGGAAGATTCTTCGATCTATGCTGACTACAATGAACAATATGAGGATGCACTAAAGGTGTTGGAGATGGAAAAGAAGAAACTGGCTGATGTTGAAAATTTGGCTAAGACTTGGAATAGAGGTGATTGGTGGAATGATTCAATCGATAATATGAGCATTGATCAACTTGAACAATTTATGATCTCCCTTTATGAGTTAAGGAAGAAGCTTTTTAAAAGGGCAGATGTTCTTTTGATGAATAATTTAATGTTTCAATAG 531 0.3691 MDMVQQRKKTTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCILCDVRAAIIVFSPADKLYSFGQPNTDVILTSYINGTTEFEDAKSTEDSSIYADYNEQYEDALKVLEMEKKKLADVENLAKTWNRGDWWNDSIDNMSIDQLEQFMISLYELRKKLFKRADVLLMNNLMFQ 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05732 176 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Trre1g05732 176 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Trre1g05732 176 Coils Coil 98 125 - -
Trre1g05732 176 Gene3D - 23 107 IPR036879 GO:0003677|GO:0046983
Trre1g05732 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Trre1g05732 176 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Trre1g05732 176 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Trre1g05732 176 PANTHER MADS BOX PROTEIN 13 161 - -
Trre1g05732 176 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Trre1g05732 176 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Trre1g05732 176 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05732 Trre-Chr1 62291718 62292248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05732 8 159 Type I MADS-box Gene Family AT5G60440 44.654 1.29e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g05732 SRF-TF 3.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05732 - - cam:101502875 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05732 1 62291718 62292248 Trre1g05732 1 62291718 62292248 ECH