Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05729 ATGCCTCTATTTCTCTTTCTTTGTTTTTTGTTTTCTAGAATTATATCCCAAGCCAAAGCAGGTGATCCTGTATCATGTGATAACAGTAGAGGAAACTACACAACCAATAGCATCTATGACAACAATCTTAAAACTGTTTTATCCAGTTTCTCTTCCCATACACAAATTAACTATGGTTTCTACAATTTCTCATATGGTCAAGACCCCGACAAAGCATACGCTATTGGTCTATGTCGCGGAGATCTTAGCCCGAATCAATGTCTTACAAACATAAACAATTCCTTTGTTTATCTCAGAGAGCAGTGTCCAAATCAAAAAGAAGCAATTGTTTGGGGTGGTGATTTCACTTTATGGTACTCAAATCGCTCGATTTTTGGGATCGTGGAAACTAGTCCTACTCAATATTTGATTTATGAAAGGAATGCAACTGATGCAGATATGTATAAGCAAGCATTGAGTAACTTGATGACAAATTTAAGAGAAAAAGCTGCATCAGGTGATTCTCGTCGTAAATATGATGCTGATAGTGTTAGTGATCCTGCAAATTTCGCAACCATATATGGTTATGCGCTTTGTATGCCCGATTTGTCATCGCAGCAATGCACTGATTGCTTGGTTCAGACAATTTCTGAAATCCCAAATTGTTGTAATGGGAAGATGGGAGGAAATATTCTTAAACCAAGTTGTCGTATTAGATTTGATCCTTATCGCTTCTTCAATTCGACGATTGTGTTAGATTCAACTGCAACTCCTCCTGAACCACCGTCACTACCACCATCATCTGCCACTAATAGCTTCTTCAGATTCGGAAAGCTAAAACAAATGTTTGAAGCTGATAACGGAGAATATGTTGATAGAGATGGAGATGAAGATGAAATTACAATTGTTGAGTCATTTCAATTTAACTTTGATACCATTCGAGTTGCTACAAATGACTTCTCTGATTCTAATAAACTCGGGCAAGGTGGATTTGGAGTTGTTTATCGAGGTAAATTACCCGATGGACAAATGATTGCCGTCAAAAGATTGTTAAAAGATTCCAGCCAAGGAGATGTGGAATTTAAAAATGAAGTACTATTAGTAGCAAAGCTTCAACATCGAAATTTAGTTAGACTACTCGGTTTCGGTTTAGAAGGGGCGGAAAGGCTGCTTATTTATGAATTTGTTACAAATAAAAGTCTTGATTACTTCATATTTGATCCAATCAGAAAAGCACAATTGAATTGGGGAAAGCGCTACGATATTATAAGAGGTATTGCTCGAGGTCTTCTTTATCTTCATGAGGATTCTCGCCTACGAATTATACACCGTGATATCAAAGCAAGCAATATTCTCTTAGACAATGAGATGAATCCTAAGATAGCCGATTTTGGATTGGCAAGATTGTTTATTATAGATCAAATCGAAGGAAATACAAATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGAATGGACAATTTTCTGTAAAATCAGATGTCTTTAGTTTTGGAGTATTGGTTCTTGAGATAATAAGTGGTCACAAAAATAGCACAAACATTGGTCATGGAAATGATATAGAGTATCTATTGAGCTATGCATGGAGATGCTGGAGAGAAGGGAAAGCTACAAATATTATAGATCCATCATTAAACAACATTTCAGCAAATGAAATAATGAGATGCATTCATATTGGTTTACTGTGTATTCAAGAAAATGTAGTTGACAGACCAACCATGGCTTCTGTTGCACTCATGCTTAATAGTAATTCTCTGAGTCTCTCAATACCTTCAAAACCTGCATATTTTTATGGAAGTGGAACTAGAAGCCTACAAGACATGCAGTTATGGGATGGACATATAGATTCAACAACTTCAGATGAATCAAAGAACACGGCTTCAAATACTGATCCATACCCTCGCTAA 1917 0.3641 MPLFLFLCFLFSRIISQAKAGDPVSCDNSRGNYTTNSIYDNNLKTVLSSFSSHTQINYGFYNFSYGQDPDKAYAIGLCRGDLSPNQCLTNINNSFVYLREQCPNQKEAIVWGGDFTLWYSNRSIFGIVETSPTQYLIYERNATDADMYKQALSNLMTNLREKAASGDSRRKYDADSVSDPANFATIYGYALCMPDLSSQQCTDCLVQTISEIPNCCNGKMGGNILKPSCRIRFDPYRFFNSTIVLDSTATPPEPPSLPPSSATNSFFRFGKLKQMFEADNGEYVDRDGDEDEITIVESFQFNFDTIRVATNDFSDSNKLGQGGFGVVYRGKLPDGQMIAVKRLLKDSSQGDVEFKNEVLLVAKLQHRNLVRLLGFGLEGAERLLIYEFVTNKSLDYFIFDPIRKAQLNWGKRYDIIRGIARGLLYLHEDSRLRIIHRDIKASNILLDNEMNPKIADFGLARLFIIDQIEGNTNRIVGTYGYMAPEYAMNGQFSVKSDVFSFGVLVLEIISGHKNSTNIGHGNDIEYLLSYAWRCWREGKATNIIDPSLNNISANEIMRCIHIGLLCIQENVVDRPTMASVALMLNSNSLSLSIPSKPAYFYGSGTRSLQDMQLWDGHIDSTTSDESKNTASNTDPYPR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05729 638 Pfam Protein kinase domain 314 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05729 638 MobiDBLite consensus disorder prediction 619 638 - -
Trre1g05729 638 CDD STKc_IRAK 319 585 - -
Trre1g05729 638 Gene3D Phosphorylase Kinase; domain 1 282 388 - -
Trre1g05729 638 SUPERFAMILY Protein kinase-like (PK-like) 298 602 IPR011009 -
Trre1g05729 638 ProSiteProfiles Protein kinase domain profile. 313 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05729 638 FunFam Cysteine-rich receptor-like protein kinase 10 132 238 - -
Trre1g05729 638 FunFam cysteine-rich receptor-like protein kinase 10 389 591 - -
Trre1g05729 638 SMART serkin_6 313 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05729 638 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Trre1g05729 638 ProSiteProfiles Gnk2-homologous domain profile. 130 238 IPR002902 -
Trre1g05729 638 Pfam Salt stress response/antifungal 141 234 IPR002902 -
Trre1g05729 638 Pfam Salt stress response/antifungal 26 121 IPR002902 -
Trre1g05729 638 Gene3D - 131 238 IPR038408 -
Trre1g05729 638 Gene3D - 23 123 IPR038408 -
Trre1g05729 638 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 631 - -
Trre1g05729 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Trre1g05729 638 Gene3D Transferase(Phosphotransferase) domain 1 389 592 - -
Trre1g05729 638 FunFam Cysteine-rich receptor-like protein kinase 10 277 388 - -
Trre1g05729 638 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 22 124 - -
Trre1g05729 638 ProSiteProfiles Gnk2-homologous domain profile. 21 124 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05729 Trre-Chr1 62273807 62276884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05729 26 638 Receptor kinase-like Gene Family AT4G38830 47.612 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05729 Pkinase 7.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05729 - - mtr:11442310 861.677