Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05728 ATGACAATTATGTCTTGCAAGCTATCATTTTCCATTTATTCTTGTCTCCTTCTTCTCATTATTAGTATTGTATCTCAAACTAAAGCCCAGCCAAATTTTGTGGCCAACTTTTGTATAAACGATAATGGCAACTACACAGCCAATAGTACGTATCAAAACAACCTTAATATCCTTTTGTCCAATCTCTCTTCCAACACAGAAATCAACTACGGTTTCTACAATTTCTCTTATGGCCAAAACAACGATAAAGTAAACGCCATTGGACTCTGCAGGGGAGATGTTAAACCTGATGTTTGCCGCAATTGTCTCAATGATTCAAGAGTTCTTCTAACACGGCTTTGTCCAAATCAAAAAGAAGCAATGGGTTGGTATGACAAATGCATGTTGCGCTACTCCAACCGATCAATATTTGGCATTATGGAAGAATTACCTTCAAATCTTTTGTCAAGCCCTACCAATGCAACAAATGTGGATCAATTTGAATTATTTAATAGTGTTCTTGGGAACTTGATGAAGAAACTGAAAGATAAAGCTGCATCAAGTGATGACTCTCGTGTTAAGTACGCTGCGGATAATGCAACTGATGTGAATTTGAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTGTCATCACAAGATTGCAATCGTTGTTTAGATGCTGCTATCTCGGATATTCCAAGATGTTGTAATAACAAGATTGGTGGTAGAGTTTTGAAACCAAGTTGTAATATTCAATTTGAATCAACTCTCTTTTACGATCCTCCACTTGTAGCAGACACAGATGATCCTCCGCCTGTAGTAGACACAGATGATCCTCCACAAGAAAAAAGCAAATCATCTCATACTACTACCATTGCCATAGTTGTGCCTACTGTTGTTGTACTTCTTGTTCTGCTAACTTTGATCATTTGCATATGCTTAAGGAGAAATCGCCATCGTATGCCTGGGGTAAATCTCGAAGAAATACAAGATGATGATGACGACGACGACGACGACGATGATGATATTGAAATCGCCGAGTCATTGCAATTCAACTTTGACACAATAGGAGTTGCTACAAATAACTTTTCCGAAGCTAATAAACTCGGGCGTGGCGGATTTGGAGTTGTTTATCAGGGTAAACTCTCGAGTGGACAAGTGATTGCGGTCAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATATTGAATTTAAGAATGAAGTGCTTTTATTGGCTAAGCTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTAGAAGGAAAAGAAAGGCTACTTGTTTACGAATTTGTTTCTAATAAAAGTCTTGATTACTTTATATTTGATCCAATAAAGAAAGCACAATTAGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTAGAGGCCTTCTTTACCTTCACGAGGACTCTCGACTTCGTATTATACATCGTGATCTTAAAGCAAGTAACATTCTCTTGGACGAAGATATGAATGCTAAAATATCAGATTTTGGGATGGCCAGACTATTGCTTGTTGATCAAACTCAAGTAAATACAAATAAAATCGTTGGAACATATGGATATATGGCTCCTGAGTATGCAATGTTTGGACAATTTACGGTAAAATCGGATGTTTTTAGTTTTGGCGTATTAGTTCTAGAGATTATAAGTGGCCAAAAAATTAGCCGCATTCTTCAAGGGCAGAGTCAGGAGGATTTACTTAGTTTTGCATGGAGAAACTGGAGGGAGGGTACAATCAGAAATATAATTGATCCATCATTAATCAACGGTTCACAAAATGAAATAATGAGATGCATTCACATTGGATTACTCTGTGTTCAAGAAAATTTGGTTGACAGACCAACTATGGCAAACATTGCACTCATGCTTAGTAGTTATTCTTTCACTATGCCTTTACCTTTGGAGCCTGCATATGCTATGGGTGGGAGAACTGGAAGCCTTACATACACGCAATCATCTGGGGAAGATATAGGAACAACGAGTTCATTTGAATCCAAAAGTAAATCAGTAAATGAGAATACAATGTCTTAA 2052 0.3738 MTIMSCKLSFSIYSCLLLLIISIVSQTKAQPNFVANFCINDNGNYTANSTYQNNLNILLSNLSSNTEINYGFYNFSYGQNNDKVNAIGLCRGDVKPDVCRNCLNDSRVLLTRLCPNQKEAMGWYDKCMLRYSNRSIFGIMEELPSNLLSSPTNATNVDQFELFNSVLGNLMKKLKDKAASSDDSRVKYAADNATDVNLNFQTIYGLVQCTPDLSSQDCNRCLDAAISDIPRCCNNKIGGRVLKPSCNIQFESTLFYDPPLVADTDDPPPVVDTDDPPQEKSKSSHTTTIAIVVPTVVVLLVLLTLIICICLRRNRHRMPGVNLEEIQDDDDDDDDDDDDIEIAESLQFNFDTIGVATNNFSEANKLGRGGFGVVYQGKLSSGQVIAVKRLSRDSGQGDIEFKNEVLLLAKLQHRNLVKLLGFCLEGKERLLVYEFVSNKSLDYFIFDPIKKAQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDEDMNAKISDFGMARLLLVDQTQVNTNKIVGTYGYMAPEYAMFGQFTVKSDVFSFGVLVLEIISGQKISRILQGQSQEDLLSFAWRNWREGTIRNIIDPSLINGSQNEIMRCIHIGLLCVQENLVDRPTMANIALMLSSYSFTMPLPLEPAYAMGGRTGSLTYTQSSGEDIGTTSSFESKSKSVNENTMS 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05728 683 CDD STKc_IRAK 366 630 - -
Trre1g05728 683 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524
Trre1g05728 683 SUPERFAMILY Protein kinase-like (PK-like) 344 630 IPR011009 -
Trre1g05728 683 FunFam Cysteine-rich receptor-like protein kinase 10 324 435 - -
Trre1g05728 683 FunFam Cysteine-rich receptor-like protein kinase 10 146 255 - -
Trre1g05728 683 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 136 - -
Trre1g05728 683 Gene3D - 31 135 IPR038408 -
Trre1g05728 683 Gene3D - 145 255 IPR038408 -
Trre1g05728 683 FunFam cysteine-rich receptor-like protein kinase 10 436 637 - -
Trre1g05728 683 Pfam Protein tyrosine and serine/threonine kinase 363 627 IPR001245 GO:0004672|GO:0006468
Trre1g05728 683 MobiDBLite consensus disorder prediction 259 285 - -
Trre1g05728 683 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 679 - -
Trre1g05728 683 ProSiteProfiles Protein kinase domain profile. 360 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05728 683 ProSiteProfiles Gnk2-homologous domain profile. 145 255 IPR002902 -
Trre1g05728 683 Gene3D Phosphorylase Kinase; domain 1 328 435 - -
Trre1g05728 683 SMART serkin_6 360 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05728 683 Pfam Salt stress response/antifungal 156 252 IPR002902 -
Trre1g05728 683 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Trre1g05728 683 ProSiteProfiles Gnk2-homologous domain profile. 33 136 IPR002902 -
Trre1g05728 683 MobiDBLite consensus disorder prediction 656 683 - -
Trre1g05728 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Trre1g05728 683 Gene3D Transferase(Phosphotransferase) domain 1 436 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05728 Trre-Chr1 62268259 62271180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05728 12 647 Receptor kinase-like Gene Family AT4G21410 50.615 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05728 PK_Tyr_Ser-Thr 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05728 - - gmx:102662291 779.63