Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05723 ATGGCAATTATGATTGTGTCTTTCAAATTTTCATTTTCCTTTTTTTATTTTCTCCTTCTTCTCATCATTAGCATTGAATCTCAAGCTATAGCCCAGCCAAATTTTTTGTACAACTTTTGTATAGACGATAATGGCAACTACACAGCCAATAGCACATATCAAACCAACCTCAACATCCTTTTGTCCAATCTCTCTACCAACACACAAATCAACTACGGTTTCTACAATTTCTCTTATGGCCAAAACACCGACAAAGTAAACGCCATTGGACTCTGCAGAGGAGATGTTAAACCTGATGTTTGCCGCAGTTGTCTTAACGATTCAAGAGTTCTTCTAACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGAAAATTGCATGTTGCGCTACTCCAACCGATCAATATTTGGCATTATGGAAGGTTCACTAACATTTTATATGTGGAACAGAAACAATGTATCACAGGTGGATCAATTTAATCAAGTACTTGGAAACTTGATGAAGAAACTGAAAGAAAAAGCTGCATCAAGTAATGACTCTCGTGTTAAGTATGCTACCGGTAATGAAACTGATGTGAGCTTGAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTATCATTTCAAGATTGCACGCGTTGTTTAGATGATGCTATCTATGAAATTCCAACTTGTTGTAATAACAAGATGGGTGGTAGAGTTGTTAAACCAAGTTGTAAGATTAGATTTGAATCTGCTCTCTTCTATGATCCTCCACTTGTAGTAGACACAGATGAAGCCTCTCCACCACAAGTTGCAGAAAAAAGCAAATCATCGCATAGTAGTAGTACTACCATTGCCATAGTTGTGCCTACTGTTGTTGTAGGTCTTGTTCTGCTAAATTTGATCATTTGCATATGCTTAAGGAGAAATCGCCGGCGCCATAGTATGGCAGGGTCAAATCTCAAAGAAATAGAAGAAGATGATGATATTGAACTAGCCGAGTCATTGCAATTCAACTTTGACACAATAGGAGTTGCTACCAATAACTTTTCCGAAGCTAATAAACTCGGACATGGCGGATTTGGAGTTGTTTATCGGGGTAAACTCTCGAGTGGACAAATGATTGCAGTCAAAAGATTGTCGGTAGATTCTGGACAAGGAGATATTGAATTTAAGAATGAAGTGCTTTTATTGGCTAAGCTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTAGAAGGAAAAGAAAGACTTCTTGTCTATGAATTTGTTCCAAATAAAAGCCTTGATTACTTTATATTTGATCAATTAAAGAAAGGACAATTAGATTGGGCAATGCGCTACAAAATTATTGGAGGTATTGCTAGAGGACTTCTTTACCTACACGAGGATTCTCGACTTCGTATTATACATCGTGATCTTAAATCAGGTAACATTCTCTTGGACGAAGATATGAATGCTAAAATATCAGATTTTGGGATGGCCAGACTGCTACTTGTTGATCAAACTCAAGTAAATACAAATAAAGTCGTTGGAACATATGGATATATGGCTCCTGAGTATGCAATGTTTGGACAATTTTCGGTAAAATCAGATGTTTTTAGCTTTGGTGTACTAGTTTTGGAGATTATAAGTGGCCAAAAAATTAGTCGCATTCTTCAAGGGCAGAGTCAGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGGAGGGTACAATCACAAATATAATAGATCCATCATTAAACAACGCTTCACAAAATGAAATAATGAGATGCGTTCACATTGGATTACTCTGTGTTCAAGAAAATGTGGTTGAAAGACCAACTATGGCAACCATTGCACTGATGCTTAGTAGTTATTCTTTCACTATGCCTTTACCTTTGGAGCCTGCAACTTCCTTCGGCGGAAGAACTAGAAGCCTTCCATACACGCAATCGTCTGGGGAAGATAAAGGAACAACAGGTTCACATGAATCCATAAAAAGTAAATCAGTAAATGAGAACTCAAGTGCTGAGTATTTCTAG 2034 0.3722 MAIMIVSFKFSFSFFYFLLLLIISIESQAIAQPNFLYNFCIDDNGNYTANSTYQTNLNILLSNLSTNTQINYGFYNFSYGQNTDKVNAIGLCRGDVKPDVCRSCLNDSRVLLTRLCPNQKEAIGWYENCMLRYSNRSIFGIMEGSLTFYMWNRNNVSQVDQFNQVLGNLMKKLKEKAASSNDSRVKYATGNETDVSLNFQTIYGLVQCTPDLSFQDCTRCLDDAIYEIPTCCNNKMGGRVVKPSCKIRFESALFYDPPLVVDTDEASPPQVAEKSKSSHSSSTTIAIVVPTVVVGLVLLNLIICICLRRNRRRHSMAGSNLKEIEEDDDIELAESLQFNFDTIGVATNNFSEANKLGHGGFGVVYRGKLSSGQMIAVKRLSVDSGQGDIEFKNEVLLLAKLQHRNLVKLLGFCLEGKERLLVYEFVPNKSLDYFIFDQLKKGQLDWAMRYKIIGGIARGLLYLHEDSRLRIIHRDLKSGNILLDEDMNAKISDFGMARLLLVDQTQVNTNKVVGTYGYMAPEYAMFGQFSVKSDVFSFGVLVLEIISGQKISRILQGQSQEDLLSFAWRNWREGTITNIIDPSLNNASQNEIMRCVHIGLLCVQENVVERPTMATIALMLSSYSFTMPLPLEPATSFGGRTRSLPYTQSSGEDKGTTGSHESIKSKSVNENSSAEYF 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05723 677 MobiDBLite consensus disorder prediction 636 677 - -
Trre1g05723 677 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Trre1g05723 677 Pfam Salt stress response/antifungal 155 251 IPR002902 -
Trre1g05723 677 Gene3D Phosphorylase Kinase; domain 1 312 425 - -
Trre1g05723 677 Pfam Protein tyrosine and serine/threonine kinase 353 617 IPR001245 GO:0004672|GO:0006468
Trre1g05723 677 ProSiteProfiles Gnk2-homologous domain profile. 144 254 IPR002902 -
Trre1g05723 677 ProSiteProfiles Protein kinase domain profile. 350 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05723 677 FunFam Cysteine-rich receptor-like protein kinase 10 146 254 - -
Trre1g05723 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Trre1g05723 677 FunFam cysteine-rich receptor-like protein kinase 10 426 627 - -
Trre1g05723 677 SUPERFAMILY Protein kinase-like (PK-like) 338 640 IPR011009 -
Trre1g05723 677 CDD STKc_IRAK 356 620 - -
Trre1g05723 677 Gene3D - 32 137 IPR038408 -
Trre1g05723 677 Gene3D - 143 254 IPR038408 -
Trre1g05723 677 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Trre1g05723 677 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 138 - -
Trre1g05723 677 Gene3D Transferase(Phosphotransferase) domain 1 426 627 - -
Trre1g05723 677 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Trre1g05723 677 FunFam Cysteine-rich receptor-like protein kinase 10 310 425 - -
Trre1g05723 677 SMART serkin_6 350 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05723 677 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 668 - -
Trre1g05723 677 MobiDBLite consensus disorder prediction 640 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05723 Trre-Chr1 62254512 62257491 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05723 15 634 Receptor kinase-like Gene Family AT4G21410 51.163 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05723 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05723 - - gmx:100782800 791.186