LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g05719	ATGTCAATAGTGTCTTGCAAGTTATTATTTTCCTTTTATTCTTTGCTCCTTCTTCTCATTATTGTATCTCAAACTAAAGCCCAGCCAAATTTTTTGGACAACTTTTGTATAAATGGTAATGGCAATTACACAGCCAATAGTACATATCAAACCAACCTTAACATCCTTTTATCCAATCTCTCTACCAACACAGAAATCAGCTACGGTTTCTACAATTTCTCTTATGGCCAAAACACCGACAAAGTAAATGCCATTGGACTCTGCAGAGGAGATGTTAAACCAGATGTTTGCCGCAAGTGTCTCAATGATTCAAGAGTTCTTCTAACACAACTTTGTCCAAATCAAAAAGAACCAATTGGTTGGTATGAAAATTGCATGTTGCGCTACTCCAACCGATCAATATTTGGCATTATGGAAGGCGAACCTTCGTTTCGTAGGTCAAATCCAAACAGTGTAACAGAGGTGGATCAATTTAATGAAGTTCTTGGGAACTTGATGAAGAAACTGAAAGAAAAAGCAGCATCAAGTGATGACTCTCGTTTTAAGTATGCTGCTGATAATGCAACTGATGTGAATTTAAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTGTCATTGCAAGATTGTAATCGTTGTTTAGATGATGCTATCTCAGAAATCCCAAGTTGTTGTAATAACAAGATTGGTGGTAAAGTTGTTAAACCAAGTTGTAGTATTAGATTTGAATCCTCTCTCTTCTATGGTCCTACGCCTGTAATGGACTCAGATGAAACCCCTCCACCAAAAGAAACAAGCAAATCATCGCATACTACCATTGCCATAGTTGTGCCTATTGTTGTTGTAGTTGTTGCTCTGCTAATTTTCATTTGCATATGCTTAAGGAGAAATCGCCACAGTAAGCCAGGAATAAATCTCAAAGAGGAAAAAGATGATGTTGATGATGATGATGATATTAAAATTGTTGAGTCATTACAATTCAATTTTGACACAATACGAGTTGCTACAAGTAACTTTTCCGAAGCTAATAAACTTGGACGTGGCGGATTTGGAGTTGTTTATCAGGGTAAACTCTCTGATGGGCAGAAGTTAGCGTTAAACTTCAACATATATCGAAATTTGGTCAAACTACTAGGTTTTTGTCTAGAAGGAAGAGAAAGACTACTTGTCTATGAATTTCTTCCTAATAAAAGCCTTGATTACTTTATATTTGATCCAATCAAGAAAGCCCAACTAAATTGGGAAAGGCGCTACAAAATTATTGGAGGTATTGCTAGAGGTCTTCTTTACCTTCACGAGGATTCCCGACTTCGTATTATACATCGTGATCTTAAAACAAGTAACATTCTATTAGACGGAAATTTGAATGCTAAAATATCGGACTTTGGTATGGCCAGACTACTTCTTGTTGATCAAACTCAAGTAAATACAGATAAAGTCGTTGGAACATATGGATATATGGCTCCTGAATATGCAATGTTTGGACAATTTTCAATAAAATCAGATGTTTTTAGTTTTGGCGTGTTAATTCTGGAGATTATAAGTGGCCAAAAAATTAGCCACATTCTTCATGGGCTGGAGGATTTACTTAGCTTTGCATGGAGAAACTGGAGGGAGGGTACAATCTCAAATATAATAGATCCATCGTTAAACAACGCTTCACAAAACGAAATAATGAGATGCATTCACATTGGATTACTCTGTGTTCAAGAAAATTTGGTTAACAGACCAACTATGGCAACCATTGCACTCATGCTTAGTAGTTATTCCATCTCTCTCCCGGTACCTTTGGAGCCTGCATCTTTTTTGGGTGGAAAAACTAGAAGCCTTCCAGTTTCAGACATGCAGTTTGGGGAAGATAATTCATGGGCGATAAGATCAAATGATCCACGTAAATCAGAAAACAAGAATTCAACTGCTGAGTTATACCCCAAGTAA	1947	0.3672	MSIVSCKLLFSFYSLLLLLIIVSQTKAQPNFLDNFCINGNGNYTANSTYQTNLNILLSNLSTNTEISYGFYNFSYGQNTDKVNAIGLCRGDVKPDVCRKCLNDSRVLLTQLCPNQKEPIGWYENCMLRYSNRSIFGIMEGEPSFRRSNPNSVTEVDQFNEVLGNLMKKLKEKAASSDDSRFKYAADNATDVNLNFQTIYGLVQCTPDLSLQDCNRCLDDAISEIPSCCNNKIGGKVVKPSCSIRFESSLFYGPTPVMDSDETPPPKETSKSSHTTIAIVVPIVVVVVALLIFICICLRRNRHSKPGINLKEEKDDVDDDDDIKIVESLQFNFDTIRVATSNFSEANKLGRGGFGVVYQGKLSDGQKLALNFNIYRNLVKLLGFCLEGRERLLVYEFLPNKSLDYFIFDPIKKAQLNWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKTSNILLDGNLNAKISDFGMARLLLVDQTQVNTDKVVGTYGYMAPEYAMFGQFSIKSDVFSFGVLILEIISGQKISHILHGLEDLLSFAWRNWREGTISNIIDPSLNNASQNEIMRCIHIGLLCVQENLVNRPTMATIALMLSSYSISLPVPLEPASFLGGKTRSLPVSDMQFGEDNSWAIRSNDPRKSENKNSTAELYPK	648

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g05719	648	SUPERFAMILY	Protein kinase-like (PK-like)	327	589	IPR011009	-
	Trre1g05719	648	Pfam	Protein tyrosine and serine/threonine kinase	375	586	IPR001245	GO:0004672\|GO:0006468
	Trre1g05719	648	Gene3D	-	29	133	IPR038408	-
	Trre1g05719	648	Gene3D	-	143	250	IPR038408	-
	Trre1g05719	648	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 10	29	134	-	-
	Trre1g05719	648	SMART	serkin_6	342	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05719	648	ProSiteProfiles	Gnk2-homologous domain profile.	31	134	IPR002902	-
	Trre1g05719	648	Gene3D	Phosphorylase Kinase; domain 1	312	369	-	-
	Trre1g05719	648	Gene3D	Transferase(Phosphotransferase) domain 1	398	595	-	-
	Trre1g05719	648	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	442	454	IPR008271	GO:0004672\|GO:0006468
	Trre1g05719	648	MobiDBLite	consensus disorder prediction	624	648	-	-
	Trre1g05719	648	Pfam	Salt stress response/antifungal	36	131	IPR002902	-
	Trre1g05719	648	Pfam	Salt stress response/antifungal	151	247	IPR002902	-
	Trre1g05719	648	FunFam	cysteine-rich receptor-like protein kinase 10	397	596	-	-
	Trre1g05719	648	ProSiteProfiles	Protein kinase domain profile.	342	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g05719	648	Gene3D	Phosphorylase Kinase; domain 1	370	397	-	-
	Trre1g05719	648	ProSiteProfiles	Gnk2-homologous domain profile.	140	250	IPR002902	-
	Trre1g05719	648	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	375	624	-	-
	Trre1g05719	648	FunFam	Cysteine-rich receptor-like protein kinase 10	143	250	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g05719	Trre-Chr1	62240372	62244088	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g05719	26	648	Receptor kinase-like Gene Family	AT4G38830	44.978	0.0	527

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre1g05719		PK_Tyr_Ser-Thr	7.9e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g05719	-		-	gmx:100791056	771.541