Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05717 ATGGGTTTTGGAACCACCAACGCCGTCAATGGTGTTTTCCTCTGCCGCGGAGACGTTAACTCAACTACATGTATGGATTGTGTAACCACTGCAGCCAAGGATATAACAAGCCGCTGTCCCAACCAAACAGAGTCAATTATATGGTACGATGAATGCATGTTGCGTTATACTAACCGTTACTTTGCTCCCACCAGTATTGTCCCAAGAGCGAATATGAACAACGGCAAAAACATATCTACATCGAAATTGGATATCTTTAATCAAATGTTGTTAGGTTTCTTGGGAGGTTTGGCTGCAGAAGCTGGAAATTCTCAGACATCGAAGCAATTTGCAGTCGGTGAAGCAAACTTCAATTTAAGCGATGATACGAATAAGGTGATTACGGTTTATGGGTTGGCACAGTGTGTGCCCGGTGTCACGAATGTTCAGTGTCAGGATTGTTTGGTAAATGCATCAAGAACTCTTTTGACTTGTTGTGAAGGAAAACAAGGTGCAAGAGCCTTGCTTGCGTCGTGTAATATCAGATACGATTTGCAACGGTTTTACAATCAATCAGCTTCAACACCAGGTTCTCCTTCTTCAGGAAAGAACAAGTCCAAGTCAAAAACAAGGACGGTCTTAATTGTTGTTCTTGTCACCGGGTCAACAATTCTGTTTTGTTTAGGCTGCTATTTCCTCATGAGAAGATCAAGATGGAAGAAATATAAAACTCTTATGAGAGAAAATTTTGGTAATGAAAGTTCCACGTTAGAATCGCTACAATTTAATTTGGCGACCATCGAAGCAGCCACAAAGAAATTTTCACCTGAGAATAAAATAGGCAAGGGAGGATTTGGAGAAGTTTACAAGGGTATTCTTATAGATGGAAGGGAAATAGCTGTAAAGAAACTATCTCAAACTTCAGGACAAGGAGCACTAGAGTTTAAAAATGAGGTTTTACTAATAGCTAAACTTCAGCATAGAAATTTGGTGACCTTAATAGGCTTTTGCTTGAAAGATCAAGAGAAAATGCTCATTTATGAATATGTGTCCAACAAAAGTCTCGATTACTTTTTATTTGATCGCAACAAGTCCAGACTATTACACTGGTTTGAACATGATAACATGAATCCTAAAATATCTGATTTTGGTATGGCAAGAATGGTGGCTCTAGATCAAGATCGAGGAAGTACAAATAGAATTGTTGGAACATATGGCTATATGTCTCAGGAATATGCAATGCACGGCCAATTTTCAGAAAAATCAGACGTCTTCAGTTTTGGAGTCATAGTTTTGGAGATAATTAGTTCAAAAAAGAATGCTCGTTCTCTTTTATCAAATAACACCGATGACCTCTTGAGTCGTGCTTGGAGACAATGGAGGGATCAAACACCATTAGAACTAATAGACCAAGATATAAGAGAATCATGCAACCATAATGAAGCTGTTAAATGCATTCAAATTGGTTTATTATGTGTTCAAGACAAACCTGATGATAGACCTTCAATGGCAAATGTTGTTTCGTATCTCACTAGCCCATCAGCTGAGTTGCCAGTTCCAGGAGAACCAACTAAGTCTCCGCATAGTGGAATACTGCAAATGGCGGTAGCAGGGGAGTTGAGTTCAGCATCTATATCAACAGTCAATGAAATGTCTTCATCCGCGGTAGCAAGTTCTACATTCTCTGCAAATGCTTAG 1677 0.3924 MGFGTTNAVNGVFLCRGDVNSTTCMDCVTTAAKDITSRCPNQTESIIWYDECMLRYTNRYFAPTSIVPRANMNNGKNISTSKLDIFNQMLLGFLGGLAAEAGNSQTSKQFAVGEANFNLSDDTNKVITVYGLAQCVPGVTNVQCQDCLVNASRTLLTCCEGKQGARALLASCNIRYDLQRFYNQSASTPGSPSSGKNKSKSKTRTVLIVVLVTGSTILFCLGCYFLMRRSRWKKYKTLMRENFGNESSTLESLQFNLATIEAATKKFSPENKIGKGGFGEVYKGILIDGREIAVKKLSQTSGQGALEFKNEVLLIAKLQHRNLVTLIGFCLKDQEKMLIYEYVSNKSLDYFLFDRNKSRLLHWFEHDNMNPKISDFGMARMVALDQDRGSTNRIVGTYGYMSQEYAMHGQFSEKSDVFSFGVIVLEIISSKKNARSLLSNNTDDLLSRAWRQWRDQTPLELIDQDIRESCNHNEAVKCIQIGLLCVQDKPDDRPSMANVVSYLTSPSAELPVPGEPTKSPHSGILQMAVAGELSSASISTVNEMSSSAVASSTFSANA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05717 558 Pfam Salt stress response/antifungal 84 177 IPR002902 -
Trre1g05717 558 Pfam Salt stress response/antifungal 7 58 IPR002902 -
Trre1g05717 558 Gene3D Transferase(Phosphotransferase) domain 1 351 510 - -
Trre1g05717 558 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 228 342 - -
Trre1g05717 558 ProSitePatterns Protein kinases ATP-binding region signature. 273 296 IPR017441 GO:0005524
Trre1g05717 558 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 382 508 - -
Trre1g05717 558 Pfam Protein tyrosine and serine/threonine kinase 270 359 IPR001245 GO:0004672|GO:0006468
Trre1g05717 558 Pfam Protein tyrosine and serine/threonine kinase 368 503 IPR001245 GO:0004672|GO:0006468
Trre1g05717 558 ProSiteProfiles Gnk2-homologous domain profile. 1 61 IPR002902 -
Trre1g05717 558 ProSiteProfiles Protein kinase domain profile. 267 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05717 558 SUPERFAMILY Protein kinase-like (PK-like) 250 521 IPR011009 -
Trre1g05717 558 Gene3D - 1 61 IPR038408 -
Trre1g05717 558 Gene3D - 68 181 IPR038408 -
Trre1g05717 558 ProSiteProfiles Gnk2-homologous domain profile. 66 181 IPR002902 -
Trre1g05717 558 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 364 - -
Trre1g05717 558 Gene3D Phosphorylase Kinase; domain 1 229 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05717 Trre-Chr1 62232904 62235622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05717 6 513 Receptor kinase-like Gene Family AT4G05200 42.039 5.61e-150 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05717 PK_Tyr_Ser-Thr 3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05717 - - ccaj:109813299 759.214