Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05716 ATGATTTCTTCCATTTCGCTTCTGTTATCCCTTCTAATCCCTCTATTTTTCACACTAAAATCCAAAGCCAATGCCCAACTAGTTTTCCGCTACCACGAATGTAACCAAGATTACGGAAACTTCACTGATAGCAGTGCCTACAAGAACAACCGTAACACGGTATTACAACAAATATATTCCAACAAAACAATAGACTATGGTTTCTTCAATTTCTCGTATGGAAATAAACCTAACAAAATATACGCAATTGGACTCTGTCGAGGAGATATAGAACCAGTTGATTGCCTCGGTTGCCTAACAACTTCCGCAGCACTTCTCACAGATCGATGTCCAATACAAAAAGAAGCAATAGGTTACTACGACTCGTGCATCTTACGCTATTCAGACTATCAATTTTTTGGCACGGTGGAAACTAAAACCAGTAATTTTTACTCTATCGAACCTAAGACAGTGGTGGAAGATGCATTTAAGCAAAAACTTAATGTCTTGTTGGACGAACTTATTAGCACAGCCGCGAATGGTGATTCGCGTAAGAAGTTTGCCGAAAAGAGTGTTAAAGTAATTGATAAACCAAGTAGTAATGAGACTATATATGGTTTGGTTCAATGTACACCAGATTTGACAAAGCAAGATTGTAGTACATGTTTGGATTCTGTTTCTCAAGGTCTTTCAAATTTCTGTGGAGATATGAAAGGTTGTTTGTATCTTGGACCAAGTTGTTCTGTTAGATATGATATTATTCCATTTTTTAAATCCATAAGAGGAGTTAAAAACAAAGAGTCACCAGCACCACAGCCACAACCTTCGGAAGCAATGGCTCATGCTAATGCACTTCCTCCTACAACTGCGAAAGGAAACGGAAGGAAATTAAGAACGGTCATCGCTATCGTTGTAGTAGTTGTGGCCGGCATACTGCTTATTGCGGCCATCGCCATTGTTGCACGCATTTATTTTGAAAGGAGAAAACCAAGACCCCAATGTACGCCTGAATTTGAAGGCCAAGAGAAAAATGAAGATGAATTTGAAGCTGAAGCTGAAGCTGGTAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAACCATCAGATTAGCTACAAACAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTTGGAACTGTTTATAAGGGTATGCTCTCTGATGGACAAGATATTGCTATCAAAAGGTTGTCTACTAATTCAAAGCAAGGAGAAACAGAATTTAAGAATGAAGTGTTGCTGACAGGGAAGCTTCAACATAGAAACTTAGTTAAACTACTAGATCCAATCAAGCGTGCAAATTTGAGTTGGGAAAGACGCTACAAAATCATAAGAGATATTGCCCGTGGTCTTCTCTATCTTCATGAAGATTCTCGATTACAAATTGTTCACCGTGATCTCAAAATAAGTAACATTTTGCTAGATGAAGAGATGAACCCAAAAATAACAGATTTTGGCATTGCAAAATTGTTTGATGCCAATCAAACTGATGGCACGACAAAAACTGTTATTGGAACTTTTGGATATATGGCTCCGGAGTACATTAGACATGGACAATTTTCAGTCAAGTCAGATGTGTTTAGTTATGGTGTAATCATTTTAGAAATTGTCTGTGGCCGAAAAGTCATCGAGAATCGTGGCGGGGATAATATAGAGGATCTACTAAGCATTGCATGGAGAAATTGGAAGGCAGGGACAACTTCAGATATTGTAGATCCATTATTAGACCAAGGTTTTAAAAAGAATGAAAAATTGAGAAGCATCCATGTAGGACTACTTTGTGTTCAAGAAGATATAGATGTGAGACCAACTATGAGTTCCGTTTTACAAATGCTTAGTAGTAGCACTTACCCACTTCCTGAGCCTTCTGAACCTCCATTTTTAATGCAACCTAAAAGGGCTTTATCTATAGCATTAAGTGGCCAATATTCAGGTTCCACAAAGTCAAGTGATTCAGGATCAGGAAGTCAATTTACTCATGGATCAACAAGTAAGTCCTTAGTTATAGGTCAATAA 2028 0.3792 MISSISLLLSLLIPLFFTLKSKANAQLVFRYHECNQDYGNFTDSSAYKNNRNTVLQQIYSNKTIDYGFFNFSYGNKPNKIYAIGLCRGDIEPVDCLGCLTTSAALLTDRCPIQKEAIGYYDSCILRYSDYQFFGTVETKTSNFYSIEPKTVVEDAFKQKLNVLLDELISTAANGDSRKKFAEKSVKVIDKPSSNETIYGLVQCTPDLTKQDCSTCLDSVSQGLSNFCGDMKGCLYLGPSCSVRYDIIPFFKSIRGVKNKESPAPQPQPSEAMAHANALPPTTAKGNGRKLRTVIAIVVVVVAGILLIAAIAIVARIYFERRKPRPQCTPEFEGQEKNEDEFEAEAEAGNDLKVGDLLQFDFETIRLATNNFSDANKLGQGGFGTVYKGMLSDGQDIAIKRLSTNSKQGETEFKNEVLLTGKLQHRNLVKLLDPIKRANLSWERRYKIIRDIARGLLYLHEDSRLQIVHRDLKISNILLDEEMNPKITDFGIAKLFDANQTDGTTKTVIGTFGYMAPEYIRHGQFSVKSDVFSYGVIILEIVCGRKVIENRGGDNIEDLLSIAWRNWKAGTTSDIVDPLLDQGFKKNEKLRSIHVGLLCVQEDIDVRPTMSSVLQMLSSSTYPLPEPSEPPFLMQPKRALSIALSGQYSGSTKSSDSGSGSQFTHGSTSKSLVIGQ 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05716 675 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Trre1g05716 675 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Trre1g05716 675 Gene3D Transferase(Phosphotransferase) domain 1 430 620 - -
Trre1g05716 675 ProSiteProfiles Gnk2-homologous domain profile. 138 249 IPR002902 -
Trre1g05716 675 FunFam Cysteine-rich receptor-like protein kinase 10 140 249 - -
Trre1g05716 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 132 - -
Trre1g05716 675 Pfam Protein kinase domain 440 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05716 675 Pfam Protein kinase domain 372 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05716 675 Gene3D Phosphorylase Kinase; domain 1 332 429 - -
Trre1g05716 675 SUPERFAMILY Protein kinase-like (PK-like) 357 647 IPR011009 -
Trre1g05716 675 MobiDBLite consensus disorder prediction 645 675 - -
Trre1g05716 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 659 - -
Trre1g05716 675 ProSiteProfiles Protein kinase domain profile. 371 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05716 675 Gene3D - 26 132 IPR038408 -
Trre1g05716 675 Gene3D - 140 249 IPR038408 -
Trre1g05716 675 Pfam Salt stress response/antifungal 34 130 IPR002902 -
Trre1g05716 675 Pfam Salt stress response/antifungal 153 245 IPR002902 -
Trre1g05716 675 FunFam cysteine-rich receptor-like protein kinase 10 423 623 - -
Trre1g05716 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Trre1g05716 675 SMART serkin_6 371 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05716 Trre-Chr1 62215310 62230499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05716 37 663 Receptor kinase-like Gene Family AT4G21410 42.105 3.54e-157 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05716 Pkinase 2.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05716 - - tpra:123882259 887.1