Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05714 ATGGGCTGTCCTGGGAGCACTCCTCTTCATCTAGCAGCTAAAGGAGGCTCTCTAGATTGCATCCGTGAACTATTGGCATGGGGTGCAGATCGTCTTCAACGTGATGCATCTGGGCGGATACCGTATGTGGTTGCTCTGAAGCACAAACACGGAGCATGTGCAGCACTATTAAATATTGCATCTGCACAGCCTCTTGTGTGGCCATCATCTTTGAAGATAATCAGTGAGCTTAATCCGGAGGCCAAATTATTATTAGAGCAGGCCTTGATGGACGCGAATAAGGAAATGGAGAAAAATATATTGAAAGGCAGTCCTTACTCTCTTCCATCTCCAGCACACTCTGATCAGATGGATGACAATATCTCTGAGGTAATTTAA 378 0.455 MGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACAALLNIASAQPLVWPSSLKIISELNPEAKLLLEQALMDANKEMEKNILKGSPYSLPSPAHSDQMDDNISEVI 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05714 125 MobiDBLite consensus disorder prediction 109 125 - -
Trre1g05714 125 SUPERFAMILY Ankyrin repeat 5 60 IPR036770 -
Trre1g05714 125 ProSiteProfiles Ankyrin repeat region circular profile. 4 30 - -
Trre1g05714 125 Pfam Ankyrin repeats (many copies) 5 42 IPR002110 GO:0005515
Trre1g05714 125 ProSiteProfiles Ankyrin repeat profile. 4 36 IPR002110 GO:0005515
Trre1g05714 125 Gene3D - 2 70 IPR036770 -
Trre1g05714 125 MobiDBLite consensus disorder prediction 101 125 - -
Trre1g05714 125 PANTHER HOMEOBOX PROTEIN WARIAI 3 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05714 Trre-Chr1 62210468 62211576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05714 5 57 Ion Channels AT2G26650 41.509 9.63e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05714 - - gmx:100800611 228.409