Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05713 ATGCTTTTTTGGCAATGGACTCTGATTTCACTTCTTCCTCTATTTTTCCCGCTAAATTCTGAAGCAAACGACCAACTAGTTTTCCGCTACCACGCATGTAACCAAAATCTCGGAAACTTCACCAAAGGTAGTGTCTACGAGAACAACCGTGACAAGGTTTTGGAACAAATATATTCCAACAAAGAAATAAACTACGGTTTCTACAATTTCTCGTATGGCGAAGAACCTAATAGAGTAAATGCAATTGGTTTCTGTAGAGGCGATGTTAATCCAACCAATTGCCGTGAATGCTTGAGAACCTCAGCAGTACTTCTAACCGATCGATGTCCAATACAGAAAGAAGCAATTGGTTACTACGATTTATGCACCTTACATTATTCAAACAATTCGCTATTTGGTGTCATGAAAACTGAAACAGGTTTTGTTTATAATATCGAAACCAAGACAGTGGTGGATGATGTGTTTAATCAAACACTTAATGTCTTGTTGGATGAACTTAAAGGCTCGGCCGCGGATGGTGACTCGCAACATAAGTTTGCTGAAAAAAGTGTTAAAGTAATTGATGAAATTAGTAGTAATAGAAATGAGACTATATATGGTTTGGTTCAGTGTACACCAGATTTGTCTAAGGAAAACTGTACTAATTGTTTGGATTCAGCTTTGGGACAGTTTTCATATTGGTGTAAGCAAATGAAAGGTTGTTTGTATCTTGGACCAAGTTGTTCTGTTAGATATGATATCACTCCTTTCTTTCAGTCCATTGTCATCAACAATACAGACTCACCAGCACCACAGCCAGCTTCTCAAGCATTTCCTCCTGCACTTTCTCCTAAAACGGCAACTTCTGCTATCTCCATCAACACATCTACTAGTAAAGGAAAGAGCAAAAAAATAAGAACGGCCATCGCTATCGTTGTAGCAATTCTTGTAGCTGGCATACTTTTGGTGGGAATATGGATTTGTTTGCGAGGGAGAAAACCAAAACCCGAACGCACGCCAGGAAATGAAGGTGAAGAGAAAAATGAAGATGAAGTTGATGTTGAAGAGGAAGAAGCTGAAGTTGAAGCTGGTAATGACCTTAAAGTTGGTGACTTGTTGCAATATGACTTTGCAACCATCAGATTAGCTACAAGCAACTTCTCTGATGCAAATAAGCTGGGTCAAGGTGGATTTGGATCTGTTTACAAGGGTACACTCTCTAATGGACATGATATCGCTATCAAAAGACTGGCTAACAATTCTGAACAAGGAGAAACCGAATTTAAGAACGAAGTATTGCTGACAGGGAAACTTCAACATCGAAATTTAGTTAAGCTACTAGGTTTCTGCTTACAAAGAAAAGAAAGACTACTGATATACGAGTTTGTCTCCAATAAAAGTCTTGATTATATCATATTTGATCCAATCAAGCGTGCAAGTTTAAATTGGGAAAGACGCTACAAAATCATAAAAGATATTGCTCGTGGTCTTCTTTATCTTCATGAAGATTCTCGATTACAAATTGTTCACCGTGATCTCAAAACAAGTAACATTCTGCTAGATGAAGAGATGAACCCAAAAATTACGGATTTTGGCATTGCAAGATTGTTTGATCCAAATCAAACTCATGGCATGACAAAGACGGTCATCGGAACTTATGGATATATGGCACCAGAGTACATTAAACATGGACAATTCTCAGTCAAATCAGATGTGTTCAGTTTTGGCGTAATCATTTTAGAAATTACTTGCGGCCAAAGAAACACTGAGATTCGAGACGGGGAGAATATAGAGGATCTATTAGGCATTGCATGGAAAAATTGGAAGGCTGGGACAAGTTTAGATATTGTAGATCCTATATTACACCAAGGTTTTAATAAGAATGAAAAATTGAGATGCATCCAAGTTGGATTACTTTGTGTTCAAGAAGATATAGTTGTGAGACCAACTATGAGTTTGGTTTTACTAATGCTTAATAGCACCTCTTACCCACTTCCTGAACCTTTGGAACCTCCTTTTTTAATGCAACCCAAAAGGGCACTATCTATACACTTAAATGAGCAATATTCAGATCCTACAAAGTCAAGTGATTCAGGATCAGGAAGTCAACCTAGTCAAGAAGGATCAACAAGTAAGTCTTCAGCTACAGGTCAACAATAA 2139 0.3782 MLFWQWTLISLLPLFFPLNSEANDQLVFRYHACNQNLGNFTKGSVYENNRDKVLEQIYSNKEINYGFYNFSYGEEPNRVNAIGFCRGDVNPTNCRECLRTSAVLLTDRCPIQKEAIGYYDLCTLHYSNNSLFGVMKTETGFVYNIETKTVVDDVFNQTLNVLLDELKGSAADGDSQHKFAEKSVKVIDEISSNRNETIYGLVQCTPDLSKENCTNCLDSALGQFSYWCKQMKGCLYLGPSCSVRYDITPFFQSIVINNTDSPAPQPASQAFPPALSPKTATSAISINTSTSKGKSKKIRTAIAIVVAILVAGILLVGIWICLRGRKPKPERTPGNEGEEKNEDEVDVEEEEAEVEAGNDLKVGDLLQYDFATIRLATSNFSDANKLGQGGFGSVYKGTLSNGHDIAIKRLANNSEQGETEFKNEVLLTGKLQHRNLVKLLGFCLQRKERLLIYEFVSNKSLDYIIFDPIKRASLNWERRYKIIKDIARGLLYLHEDSRLQIVHRDLKTSNILLDEEMNPKITDFGIARLFDPNQTHGMTKTVIGTYGYMAPEYIKHGQFSVKSDVFSFGVIILEITCGQRNTEIRDGENIEDLLGIAWKNWKAGTSLDIVDPILHQGFNKNEKLRCIQVGLLCVQEDIVVRPTMSLVLLMLNSTSYPLPEPLEPPFLMQPKRALSIHLNEQYSDPTKSSDSGSGSQPSQEGSTSKSSATGQQ 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05713 712 CDD STKc_IRAK 386 652 - -
Trre1g05713 712 SUPERFAMILY Protein kinase-like (PK-like) 366 683 IPR011009 -
Trre1g05713 712 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Trre1g05713 712 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Trre1g05713 712 Pfam Protein kinase domain 381 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05713 712 Gene3D Phosphorylase Kinase; domain 1 341 455 - -
Trre1g05713 712 FunFam Cysteine-rich receptor-like protein kinase 10 340 455 - -
Trre1g05713 712 MobiDBLite consensus disorder prediction 679 712 - -
Trre1g05713 712 FunFam cysteine-rich receptor-like protein kinase 10 456 658 - -
Trre1g05713 712 Pfam Salt stress response/antifungal 152 246 IPR002902 -
Trre1g05713 712 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Trre1g05713 712 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 131 - -
Trre1g05713 712 MobiDBLite consensus disorder prediction 327 350 - -
Trre1g05713 712 Gene3D - 25 131 IPR038408 -
Trre1g05713 712 Gene3D - 141 250 IPR038408 -
Trre1g05713 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Trre1g05713 712 Gene3D Transferase(Phosphotransferase) domain 1 456 657 - -
Trre1g05713 712 SMART serkin_6 380 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05713 712 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 124 700 - -
Trre1g05713 712 ProSiteProfiles Protein kinase domain profile. 380 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05713 712 MobiDBLite consensus disorder prediction 677 712 - -
Trre1g05713 712 ProSiteProfiles Gnk2-homologous domain profile. 136 250 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05713 Trre-Chr1 62204126 62209273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05713 38 669 Receptor kinase-like Gene Family AT4G21410 45.853 7.30e-180 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05713 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05713 - - tpra:123882259 1210.28