Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05711 ATGATCATCGCTATCGTTCTAGCAGTTGTCGTGGCTGGCATAGTGGTTGTTGTTTTATGCATTTATTTCAAAAGGAGAAAATCAAGACTTGAATACACGCATGAATATGAAGGCCAAGAGAAAAATGAAGATGAATTTGAAGCTGAAGCGAGTAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTGGATACCGTCAGATTAGCTACAAGCAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTTGGAACCGTTTATAAGGGTATGCTCTCTGATGGACAATATGTTGCTATCAAAAGGTTGGCAATCAATTCTAATCAAGGAGAAACAGAATTTAAGAATGAAGTGTTGCTAACAGGGAAGCTTCAACACCGAAATTTAGTTAAACTAATAGATCCAACTAAGCGTGCAAATTTGAATTGGGAAAGACGCTATAAAATCATAAAAGATATTGCCCGGGGTCTTGTTTATCTACATGAAGATTCTCGATTACAAATTGTTCACCGTGATCTCAAAATAAGTAACATTTTGCTAGATGAAGAGATGAATCCAAAAATTACAGATTTTGGCATTGCAAGATTGTTTGACGCCAATCAAACTCATGGCATGACAAAGACTGTCATTGGGACTTTTGGATATATGGCTCCAGAGTACATTAAAGACGGAGAATTTTCAGTCAAGTCAGATGTGTACAGTTTTGGTGTAATGATTTTAGAAATTGTTTGTGGTCGGAGAATTATCGAAAAACATGGCGGGGAGAACATAGAGAATCTATTAAGCATCGCATGGAGAAATTGGAAGACAGGAACAACTTCAGATATTGTAGATCCATTATTAGACCAAGGTTTTAATAAGAATGAAAAAATAAGAAGCATCCATGTTGGATTACTATGTGTTCAAGAAGATATAGCTATGAGACCAGCTATGAGTTTGGTTTTACTAATGCTCAATAGCTCTTCTTTCCCACTTCCTGAACCATTGGAACCTCCCTTTTTAATGCAATCAAAAAGGACATTATCTATAGTGTCAAGTGACCAATTTACAGGTTTCACAATGTCAACTGATTCAGTATCAGGAAGCCAATTTACTGAAGGATCAACAAGTAAATCTTCAGTTACAGATTAA 1134 0.3607 MIIAIVLAVVVAGIVVVVLCIYFKRRKSRLEYTHEYEGQEKNEDEFEAEASNDLKVGDLLQFDLDTVRLATSNFSDANKLGQGGFGTVYKGMLSDGQYVAIKRLAINSNQGETEFKNEVLLTGKLQHRNLVKLIDPTKRANLNWERRYKIIKDIARGLVYLHEDSRLQIVHRDLKISNILLDEEMNPKITDFGIARLFDANQTHGMTKTVIGTFGYMAPEYIKDGEFSVKSDVYSFGVMILEIVCGRRIIEKHGGENIENLLSIAWRNWKTGTTSDIVDPLLDQGFNKNEKIRSIHVGLLCVQEDIAMRPAMSLVLLMLNSSSFPLPEPLEPPFLMQSKRTLSIVSSDQFTGFTMSTDSVSGSQFTEGSTSKSSVTD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05711 377 ProSiteProfiles Protein kinase domain profile. 74 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05711 377 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 363 - -
Trre1g05711 377 FunFam cysteine-rich receptor-like protein kinase 10 126 326 - -
Trre1g05711 377 SUPERFAMILY Protein kinase-like (PK-like) 60 353 IPR011009 -
Trre1g05711 377 Pfam Protein kinase domain 145 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05711 377 Pfam Protein kinase domain 75 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05711 377 MobiDBLite consensus disorder prediction 358 377 - -
Trre1g05711 377 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524
Trre1g05711 377 SMART serkin_6 74 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05711 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Trre1g05711 377 Gene3D Transferase(Phosphotransferase) domain 1 133 322 - -
Trre1g05711 377 Gene3D Phosphorylase Kinase; domain 1 34 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05711 Trre-Chr1 62188239 62192042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05711 1 366 Receptor kinase-like Gene Family AT4G21410 47.631 1.22e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05711 Pkinase 3.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05711 - - tpra:123882259 527.709