Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05706 ATGCTGCTAAGGGATATAAAGGGAGACACTATACAGGCTATAGTCATGCGTGATGATATTGAGAAATGGAAACCAAAGCTAATGGAAGGAAAATGCTATTACATGCGCAATTTTAAAGTTGTTGATTATGATGCATCTTTCAAGATGTGCACACAAAAATTCATGTTAGTATTCCTTCCGATAGCCACAAAGGTTGAAGAAATTGATAACCCCGGTATACCATTGTCAAAGTTCAACTTTAAAGATTTCTCAGAAATACAGGCTGGGAATTATGTTCCTGATCTATTAGTAGATGCTATTGGAATTGTTCAGTCCGTAGGTAAGTGTGTTACAGCATCTAACAATAAAAAAGGAAGTGCTTCATTTATCCTTCAAGATTTAAGGGAAAATGTCCTTGATGTCACTCTTTGGGACGCTTTATCTGTTGAGTTCATATCCTCTTATAATAAAAGGACTGCTGTTGGGCCAATTGTTGTCATTATCAAACATGTTAGAGTCAAGGAAGCAACAGGTACATACCCTTTGCAATTTACAAATGTCTGGAACGGCACAAAGATTATGTTCGATCATAACCATCCAGAAATTAAAGCTTTCGTTGCAAGTTTGCCCAAAAATGTGATTAACATGTCACAGAATACTATCATATCTTCGAGCTCAACCCAATATTATACCCAAAGCTCTGCTGGTTCTCAATATGATTCTGATGAAAATTTCATGAAGCATGCTTCCATTGTTTCTTTGGCAGATATGAAAAAACTTAAAAAGGAAACTTTTTGTGTTACTGTTGTCACTCTAGATCAAATTATACCTACAAACCAAGGTTGGTATTTCTTGGCATGTAAAGATTGTAATTGCAAGACTGAAGGTTTTGAACCTCCATATGTTTGCAAAAAGGGACACAAGACTGTTGACCCTCTCATTAAGTATAAGTTGGATGTTGAAGTTACTGATGGGCAAGATACTGCAAAGTTTGTATTTTGGGATAGTTCCCTTGATCAGATTGTTGGCCTTACTGCTGCCGCTTTGGTTGAAAAACAAAAGAAGGATGGACTTGTCGGCCCTCATGAGTATCCTGATATGCTAGAGGATCTGATGAATAGGACATTTGCTTTCCGAGTTAAGTGGCAGCCAGGATGGGGTGGTCAAGCATCCGTGTTGAATGTTAAAGATAGCAAAGAGTTGGTCGCCAAAATACAAGAGCATTTACCGGTTGCAGAGAGTTCATGCAAACAAGTTGATGTCATTGAAACTATTGATGAGGATGTTGCAACCTTGGATGACTCACCTCAACTTCAGGGCTTTACAAAGGATGATATTCAAAATTTTGATTGCTTGGATGATTCCATTCTGTCAACTCCAAACACTTCTAAGACAGCTGAAAATGACCTTGGTTCTACCTCTCACAAAACTCCAAACAAACGAAATGCTCCCAAACCACTCCCAACAGATTTATCAAAAATTGGTTCACCATTGTCATCCACAAGAGGAAGGAAGCTTATTAAGAAGGAGAAGATTTAA 1518 0.3788 MLLRDIKGDTIQAIVMRDDIEKWKPKLMEGKCYYMRNFKVVDYDASFKMCTQKFMLVFLPIATKVEEIDNPGIPLSKFNFKDFSEIQAGNYVPDLLVDAIGIVQSVGKCVTASNNKKGSASFILQDLRENVLDVTLWDALSVEFISSYNKRTAVGPIVVIIKHVRVKEATGTYPLQFTNVWNGTKIMFDHNHPEIKAFVASLPKNVINMSQNTIISSSSTQYYTQSSAGSQYDSDENFMKHASIVSLADMKKLKKETFCVTVVTLDQIIPTNQGWYFLACKDCNCKTEGFEPPYVCKKGHKTVDPLIKYKLDVEVTDGQDTAKFVFWDSSLDQIVGLTAAALVEKQKKDGLVGPHEYPDMLEDLMNRTFAFRVKWQPGWGGQASVLNVKDSKELVAKIQEHLPVAESSCKQVDVIETIDEDVATLDDSPQLQGFTKDDIQNFDCLDDSILSTPNTSKTAENDLGSTSHKTPNKRNAPKPLPTDLSKIGSPLSSTRGRKLIKKEKI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05706 505 CDD RPA1_DBD_B_like 98 203 - -
Trre1g05706 505 PANTHER OS03G0429900 PROTEIN 119 478 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre1g05706 505 MobiDBLite consensus disorder prediction 453 505 - -
Trre1g05706 505 MobiDBLite consensus disorder prediction 453 473 - -
Trre1g05706 505 Gene3D - 72 214 IPR012340 -
Trre1g05706 505 Gene3D - 222 402 IPR012340 -
Trre1g05706 505 SUPERFAMILY Nucleic acid-binding proteins 254 378 IPR012340 -
Trre1g05706 505 SUPERFAMILY Nucleic acid-binding proteins 78 210 IPR012340 -
Trre1g05706 505 CDD RPA1_DBD_A_like 1 65 - -
Trre1g05706 505 Pfam Replication factor-A C terminal domain 269 375 IPR013955 -
Trre1g05706 505 SUPERFAMILY Nucleic acid-binding proteins 1 68 IPR012340 -
Trre1g05706 505 Gene3D - 1 67 IPR012340 -
Trre1g05706 505 CDD RPA1_DBD_C 252 374 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05706 Trre-Chr1 62164643 62167202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05706 3 373 Core DNA Replication Machinery Family AT5G08020 26.110 3.36e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05706 - - tpra:123884216 600.127