Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05705 ATGGCAATTGTGATTCTGTCTTGCAAGTTATCATTTTCCTTTTTTTATTTTCTCCTTCTCATTATTACTATTCTATCTCAAGCTAAAGCCCAACCAAATTTTTTGAACAACTTTTGTATAAACAAAAATGGAAACTACACAGCCAATAGCACATATCAAACCAACCTCAACATCCTTTTGTCCAATCTCTCAACCAACACACAAATCGACTATGGTTTTTACAATTTCTCTTATGGCCAAAACACCGACAAAGTAAACGCCATTGGACTCTGCAGGGGAGATGTTAAACCCGATGTTTGTCGCAATTGTCTCAATGATTCAAGAGTTCTTCTAACACGACTTTGTCCAAATCAAAAAGAAGCAATTGGTTGGTATGAAAATTGCATGTTGCGCTACTCCAACCGATCAATATTTGGCCTTATGGAACAATTTCCTTGGTTTTATAGTGCAAGCAAAAGTATAGAAAAAGAGGTGGATCTATTTAATCAAGTTCTTGGGAACTTGATGAAGAAACTGAAAGAAAAAGCAGCATCGAGTAATGACTCTCGTGTTAAGTATGCTACGGGTAATGAAACTGATGTGAAGTTGAATTTTCAAACCATATATGGTCTTGTGCAGTGTACACCTGATTTATCATCACAAGATTGCATGGATTGTTTAAATGGTGTTATCGCAGAAATTCCAACTTGTTGTAGTAACAAGTTAAGTGCTAGAATTATTGAACCAAGTTGTAATATTAGATATGATTCCTATCCCTTCTACAGTTCTCCGCTTGTAGTAGACCCAGATGAAACCTCTCGAGCTCGACCACAAGAAAAAAGCAAATCATCTCATACTACTACCATTGCCATAGTTGTGCCTACTGTTGTTGTAGTTCTTGTTCTTCTAACTTTGATCATTTGCATATGCTTAAGGAGAAATCGCCATAGTATGGCAGGGTCAAATCTCGAAGAAATACAAGATGATGATGATATTGAAATCGCTGAGTCACTGCAATTCAACTTCAACACAATAGGAGTTGCTACAAATGACTTTTCCGAAACTAATAAACTCGGACATGGCGGATTTGGAGTTGTCTATCAGGGAAAACTCTCGAATGGACAAGTGATTGCGGTCAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATATTGAATTTAAAAATGAAGTGCTTTTATTGGCTAAGCTTCAACATCGAAATTTAGTCAAACTACTTGGTTTTTGTCTCGAAAGAAAAGAAAGGCTACTTGTTTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTTATATTTGATCCAATAAAGAAAGCACAATTAGATTGGGAAAGGCGCTACAAAATCATTGGAGGTATTGCTAGAGGCCTTCTTTACCTTCATGAGGATTCTCGACTTCGTATTATACATCGTGATCTTAAAGCAAGTAACATTCTCTTGGACAAAGATATGAATGCTAAAATATCAGATTTTGGGATGGCCAGACTATTGCTTGTTGATCAAACTCAAGTAAATACAAATAAAATCGTTGGAACCTATGGATATATGGCTCCTGAATATGCAATGTTTGGACAATTTACGGTAAAATCGGATGTTTTTAGTTTTGGCGTATTAGTTCTAGAGATTATAAGTGGCCAAAAAATTAGTCGCATTCTTCAAGGGCAGAGTCAGGAGGATTTACTTAGTTTTGCATGGAGAAACTGGAGGGAGGGTACAATCACAAATATAATAGATCCATCATTAATCAATGGTTCACAAAATGAAATAATGAGATGCATTCACATTGGATTACTCTGTGTTCAAGAAAATTTGGTTGACAGACCAACTATGGCAAACATTGCACTCATGCTTAGTAGTTATTCTTTCACTATGCCTCTACCTTTGGAGCCTGCATCTTTCTTTGGCGGAAGAACTGGTAGCCTTACATACACGCAATCATCTGGGGAAGATAAAGGAACAACAGGTTCACTTGAATCCATGAAAAGTAAATCAGTAAATGAGAATACAATGTCTTAA 2010 0.3627 MAIVILSCKLSFSFFYFLLLIITILSQAKAQPNFLNNFCINKNGNYTANSTYQTNLNILLSNLSTNTQIDYGFYNFSYGQNTDKVNAIGLCRGDVKPDVCRNCLNDSRVLLTRLCPNQKEAIGWYENCMLRYSNRSIFGLMEQFPWFYSASKSIEKEVDLFNQVLGNLMKKLKEKAASSNDSRVKYATGNETDVKLNFQTIYGLVQCTPDLSSQDCMDCLNGVIAEIPTCCSNKLSARIIEPSCNIRYDSYPFYSSPLVVDPDETSRARPQEKSKSSHTTTIAIVVPTVVVVLVLLTLIICICLRRNRHSMAGSNLEEIQDDDDIEIAESLQFNFNTIGVATNDFSETNKLGHGGFGVVYQGKLSNGQVIAVKRLSRDSGQGDIEFKNEVLLLAKLQHRNLVKLLGFCLERKERLLVYEFVPNKSLDYFIFDPIKKAQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDKDMNAKISDFGMARLLLVDQTQVNTNKIVGTYGYMAPEYAMFGQFTVKSDVFSFGVLVLEIISGQKISRILQGQSQEDLLSFAWRNWREGTITNIIDPSLINGSQNEIMRCIHIGLLCVQENLVDRPTMANIALMLSSYSFTMPLPLEPASFFGGRTGSLTYTQSSGEDKGTTGSLESMKSKSVNENTMS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05705 669 SUPERFAMILY Protein kinase-like (PK-like) 330 615 IPR011009 -
Trre1g05705 669 Gene3D Transferase(Phosphotransferase) domain 1 421 622 - -
Trre1g05705 669 FunFam cysteine-rich receptor-like protein kinase 10 421 622 - -
Trre1g05705 669 Pfam Protein tyrosine and serine/threonine kinase 348 612 IPR001245 GO:0004672|GO:0006468
Trre1g05705 669 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Trre1g05705 669 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05705 669 Gene3D Phosphorylase Kinase; domain 1 309 420 - -
Trre1g05705 669 Gene3D - 32 136 IPR038408 -
Trre1g05705 669 Gene3D - 147 253 IPR038408 -
Trre1g05705 669 FunFam Cysteine-rich receptor-like protein kinase 10 146 253 - -
Trre1g05705 669 Pfam Salt stress response/antifungal 39 134 IPR002902 -
Trre1g05705 669 Pfam Salt stress response/antifungal 156 251 IPR002902 -
Trre1g05705 669 SMART serkin_6 345 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05705 669 FunFam Cysteine-rich receptor-like protein kinase 10 306 420 - -
Trre1g05705 669 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 666 - -
Trre1g05705 669 ProSiteProfiles Gnk2-homologous domain profile. 34 137 IPR002902 -
Trre1g05705 669 MobiDBLite consensus disorder prediction 642 669 - -
Trre1g05705 669 ProSiteProfiles Gnk2-homologous domain profile. 143 253 IPR002902 -
Trre1g05705 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Trre1g05705 669 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 137 - -
Trre1g05705 669 CDD STKc_IRAK 351 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05705 Trre-Chr1 62148023 62151176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05705 15 629 Receptor kinase-like Gene Family AT4G21410 50.390 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g05705 PK_Tyr_Ser-Thr 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05705 - - gmx:100782800 800.816